Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,512,699 T→C N3S (AAC→AGC)  mntH ← Mn(2(+))/Fe(2(+)): H(+) symporter MntH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,512,6990TC100.0% 314.5 / NA 87N3S (AAC→AGC) mntHMn(2(+))/Fe(2(+)): H(+) symporter MntH
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/44);  total (43/44)

ACCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGAAAAGATTGAT  >  NC_000913/2512572‑2512835
                                                                                                                               |                                                                                                                                        
ccccGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTtgt                                                                                                                              <  2:997206/139‑1 (MQ=255)
aCCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTtgt                                                                                                                              <  2:1043871/140‑1 (MQ=255)
aCCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTtgt                                                                                                                              <  1:267754/140‑1 (MQ=255)
  ccGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGc                                                                                                                            <  2:677550/140‑1 (MQ=255)
  ccGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGc                                                                                                                            >  2:211016/1‑140 (MQ=255)
  ccGCCTGAATATAGTTCGCAAAGTTACCGAGATCGATATACCCAATCGCCGCAATGAATTCTGGTCCCATTAATGCGAGCCTCATCTTGCGCGACGCCCGTCCGCTGCTACTCTCAGCGCGACAGCTCGTCATCTTGTGc                                                                                                                            <  2:221574/140‑1 (MQ=255)
   cGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTc                                                                                                                                     <  2:1016461/130‑1 (MQ=255)
   cGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTc                                                                                                                                     >  1:1016461/1‑130 (MQ=255)
    gCCTGAATATTGGTCGCAAAGTTACCGTGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCct                                                                                                                          >  1:221120/1‑140 (MQ=255)
    gCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTtgt                                                                                                                              >  2:499099/1‑136 (MQ=255)
    gCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTtgt                                                                                                                              <  1:499099/136‑1 (MQ=255)
    gCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCct                                                                                                                          <  1:306559/140‑1 (MQ=255)
     ccTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCctc                                                                                                                         >  2:1077472/1‑140 (MQ=255)
     ccTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCctc                                                                                                                         >  1:126596/1‑140 (MQ=255)
         aaTATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTaaa                                                                                                                     >  2:888420/1‑140 (MQ=255)
           tatTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAAc                                                                                                                   <  2:214256/140‑1 (MQ=255)
                gTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTtgt                                                                                                                              <  2:738265/124‑1 (MQ=255)
                gTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTtgt                                                                                                                              >  1:738265/1‑124 (MQ=255)
                gTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGc                                                                                                              >  1:854658/1‑140 (MQ=255)
                  cGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCt                                                                                                            <  1:893135/140‑1 (MQ=255)
                   gCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCtt                                                                                                           >  2:835624/1‑140 (MQ=255)
                    cAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCttt                                                                                                          >  2:618838/1‑140 (MQ=255)
                     aaaGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTg                                                                                                         <  1:349183/140‑1 (MQ=255)
                       aGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCt                                                                                                       <  2:676738/140‑1 (MQ=255)
                       aGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCt                                                                                                       <  1:211016/140‑1 (MQ=255)
                            ccGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGtt                                                                                                  <  1:835624/140‑1 (MQ=255)
                             cGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGttt                                                                                                 <  2:522890/140‑1 (MQ=255)
                                   cGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCt                                                                                           >  1:274328/1‑140 (MQ=255)
                                         aaCCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCa                                                                                     <  2:407833/140‑1 (MQ=255)
                                         aaCCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCa                                                                                     <  1:960643/140‑1 (MQ=255)
                                         aaCCAATCGCCGCAATGAACGCAGGT‑CCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCaa                                                                                    >  1:436696/1‑140 (MQ=255)
                                              aTCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACga                                                                                >  2:157456/1‑140 (MQ=255)
                                               tCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACgag                                                                               >  2:501302/1‑140 (MQ=255)
                                               tCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACgag                                                                               >  2:597424/1‑140 (MQ=255)
                                                cgccgcAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATg                                                                                             >  1:237951/1‑125 (MQ=255)
                                                cgccgcAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATg                                                                                             <  2:237951/125‑1 (MQ=255)
                                                cgccgcAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACgaga                                                                              >  2:613686/1‑140 (MQ=255)
                                                cgccgcAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACgaga                                                                              >  2:1019310/1‑140 (MQ=255)
                                                cgccgcAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACgaga                                                                              >  1:732272/1‑140 (MQ=255)
                                                   cgcAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCaaa                                                                                   <  2:833777/132‑1 (MQ=255)
                                                   cgcAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCaaa                                                                                   >  1:833777/1‑132 (MQ=255)
                                                        tGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTAt                                                                      <  1:597424/140‑1 (MQ=255)
                                                        tGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTAt                                                                      <  1:501302/140‑1 (MQ=255)
                                                                ggTCCCATTAGTGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCa                                                              >  2:912087/1‑140 (MQ=255)
                                                                 gTCCCTTTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCaaa                                                                  <  2:697410/135‑1 (MQ=255)
                                                                 gTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCaaa                                                                  >  1:697410/1‑135 (MQ=255)
                                                                 gTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCAt                                                             >  1:857269/1‑140 (MQ=255)
                                                                  tCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCAtt                                                            <  1:613686/140‑1 (MQ=255)
                                                                    ccATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTa                                                          >  2:87148/1‑140 (MQ=255)
                                                                          aTGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGa                                                    <  1:888420/140‑1 (MQ=255)
                                                                           tGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAAtt                                                                >  1:631262/1‑127 (MQ=255)
                                                                           tGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAAtt                                                                <  2:631262/127‑1 (MQ=255)
                                                                               aGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATtgtg                                               >  1:275846/1‑140 (MQ=255)
                                                                               aGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATtgtg                                               >  1:743140/1‑140 (MQ=255)
                                                                                gCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTGTGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTgtgg                                              >  2:410194/1‑140 (MQ=255)
                                                                                gCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTgtgg                                              >  1:496413/1‑140 (MQ=255)
                                                                                  cTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTgtggtg                                            <  1:951507/140‑1 (MQ=255)
                                                                                  cTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTgtggtg                                            <  1:1077472/140‑1 (MQ=255)
                                                                                  cTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTgtggtg                                            <  1:87148/140‑1 (MQ=255)
                                                                                  cTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTgtggtg                                            <  2:854658/140‑1 (MQ=255)
                                                                                  cTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTgtggtg                                            >  1:233839/1‑140 (MQ=255)
                                                                                     aTCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGAtt                                         >  2:982647/1‑140 (MQ=255)
                                                                                      tCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGAttt                                        <  1:1056029/140‑1 (MQ=255)
                                                                                       cTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTtc                                       <  1:1019310/140‑1 (MQ=255)
                                                                                            gcgcCGCCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGa                                  <  2:436696/140‑1 (MQ=255)
                                                                                             cgccgcCCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGAt                                 >  1:841737/1‑140 (MQ=255)
                                                                                              gccgccCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATa                                <  1:261724/140‑1 (MQ=255)
                                                                                               ccgccCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAg                               >  2:784377/1‑140 (MQ=255)
                                                                                               ccgccCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAg                               >  1:998098/1‑140 (MQ=255)
                                                                                                cgccCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGa                              <  1:912087/140‑1 (MQ=255)
                                                                                                 gccCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGAc                             <  2:233839/140‑1 (MQ=255)
                                                                                                 gccCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGAc                             <  2:126596/140‑1 (MQ=255)
                                                                                                 gccCGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGAc                             <  1:784377/140‑1 (MQ=255)
                                                                                                  cccGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGAcc                            <  2:914591/140‑1 (MQ=255)
                                                                                                  cccGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGAcc                            >  2:826663/1‑140 (MQ=255)
                                                                                                  cccGTCCGCTGCTACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGAcc                            <  2:841737/140‑1 (MQ=255)
                                                                                                          ctgctACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTAt                    >  2:1044158/1‑140 (MQ=255)
                                                                                                            gctACTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGa                  <  1:1044158/140‑1 (MQ=255)
                                                                                                               aCTCTCAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTa               >  2:193298/1‑140 (MQ=255)
                                                                                                                   tcAACGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGaa           <  2:274328/140‑1 (MQ=255)
                                                                                                                     aaCGCGATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGaaaa         >  2:151817/1‑140 (MQ=255)
                                                                                                                       cgcgATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTa                     >  1:1097345/1‑126 (MQ=255)
                                                                                                                       cgcgATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTa                     <  2:1097345/126‑1 (MQ=255)
                                                                                                                       cgcgATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGAAAAGa       >  2:240821/1‑140 (MQ=255)
                                                                                                                          gATAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGAAAAGATtg    >  1:557956/1‑140 (MQ=255)
                                                                                                                           aTAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGAAAAGATtga   >  2:882872/1‑140 (MQ=255)
                                                                                                                            tAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGAAAAGATtgat  <  1:377441/140‑1 (MQ=255)
                                                                                                                            tAGCTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGAAAAGATtgat  <  1:193298/140‑1 (MQ=255)
                                                                                                                               |                                                                                                                                        
ACCCGCCTGAATATTGGTCGCAAAGTTACCGGGATCGATATAACCAATCGCCGCAATGAACGCAGGTCCCATTAATGCGAGCCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACATAGCCTTTGCTATGTTTCATGCTATGCCAAACGAGAATGATTATCAAATTCATTTAAATGGATTGTGGTGATTTCTCTGATAGACCAGGATTATGACTACGAAAAGATTGAT  >  NC_000913/2512572‑2512835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A