Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,788,007 T→C pseudogene (1611/2253 nt) ygaQ → putative uncharacterized protein YgaQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,788,0070TC100.0% 286.7 / NA 80pseudogene (1611/2253 nt)ygaQputative uncharacterized protein YgaQ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/43);  total (37/43)

ATGTCATCACTGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGTATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATGGCATATATAGCCGCTC  >  NC_000913/2787873‑2788134
                                                                                                                                      |                                                                                                                               
aTGTCATCACTGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATccc                                                                                                                            >  1:1023882/1‑140 (MQ=255)
     atcaCTGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAg                                                                                                                       >  1:556856/1‑140 (MQ=255)
     atcaCTGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAg                                                                                                                       >  1:600779/1‑140 (MQ=255)
      tcaCTGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGa                                                                                                                      >  1:347053/1‑140 (MQ=255)
       caCTGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGaa                                                                                                                     >  1:851456/1‑140 (MQ=255)
          tGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGa                                                                                                                  <  1:769352/140‑1 (MQ=255)
               tATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGat                                                                                                             >  1:852268/1‑140 (MQ=255)
                aTGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGata                                                                                                            <  2:556856/140‑1 (MQ=255)
                aTGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGata                                                                                                            <  1:813980/140‑1 (MQ=255)
                 tGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGatat                                                                                                           >  2:749398/1‑140 (MQ=255)
                    aaGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGa                                                                                                        >  2:588406/1‑140 (MQ=255)
                      gagaTGATTTAAGCGCCATTGATTTTTCATTGCTCATGAGAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGatt                                                                                                      <  2:458395/140‑1 (MQ=255)
                         atgatTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGattaac                                                                                                   >  1:940054/1‑140 (MQ=255)
                         atgatTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGattaac                                                                                                   >  1:426355/1‑140 (MQ=255)
                         atgatTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGattaac                                                                                                   >  2:630212/1‑140 (MQ=255)
                         atgatTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGattaac                                                                                                   >  2:533089/1‑140 (MQ=255)
                          tgatTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGattaaca                                                                                                  >  2:250093/1‑140 (MQ=255)
                            atTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGattaacatt                                                                                                >  2:1084234/1‑140 (MQ=255)
                                   cgcCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACg                                                                                         >  2:428656/1‑140 (MQ=255)
                                   cgcCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACg                                                                                         <  2:1023882/140‑1 (MQ=255)
                                     ccATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAt                                                                                       <  2:852268/140‑1 (MQ=255)
                                     ccATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAt                                                                                       >  2:1107588/1‑140 (MQ=255)
                                      cATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAtt                                                                                      >  2:985776/1‑140 (MQ=255)
                                      cATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAtt                                                                                      >  1:441916/1‑140 (MQ=255)
                                      cATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAtt                                                                                      <  2:190913/140‑1 (MQ=255)
                                      cATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAt                                                                                       >  2:659086/1‑139 (MQ=255)
                                      cATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAt                                                                                       <  1:659086/139‑1 (MQ=255)
                                       aTTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGAttt                                                                                     >  2:61891/1‑140 (MQ=255)
                                           aTTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCt                                                                                 <  1:1065138/140‑1 (MQ=255)
                                             ttttCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTaa                                                                               <  2:426355/140‑1 (MQ=255)
                                             ttttCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTaa                                                                               <  1:61891/140‑1 (MQ=255)
                                             ttttCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTaa                                                                               <  1:630212/140‑1 (MQ=255)
                                                tCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACaa                                                                            >  2:353834/1‑140 (MQ=255)
                                                        cATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATc                                                                    >  2:1036333/1‑140 (MQ=255)
                                                        cATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATc                                                                    <  1:749398/140‑1 (MQ=255)
                                                                cGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAAt                                                            >  2:877777/1‑140 (MQ=255)
                                                                cGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAAt                                                            <  2:958647/140‑1 (MQ=255)
                                                                cGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAAt                                                            >  2:446952/1‑140 (MQ=255)
                                                                   tAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGAc                                                         >  1:209601/1‑140 (MQ=255)
                                                                    aaaaGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACt                                                        <  1:173741/140‑1 (MQ=255)
                                                                     aaaGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACtt                                                       <  2:851456/140‑1 (MQ=255)
                                                                      aaGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACttt                                                      <  1:533089/140‑1 (MQ=255)
                                                                           ttttCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCaa                                                             >  1:89432/1‑128 (MQ=255)
                                                                           ttttCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCaa                                                             <  2:89432/128‑1 (MQ=255)
                                                                           ttttCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTAtt                                                 <  1:446952/140‑1 (MQ=255)
                                                                               cATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAAc                                             <  2:532854/140‑1 (MQ=255)
                                                                               cATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTAAAc                                             <  2:347053/140‑1 (MQ=255)
                                                                                aTTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAAcc                                            <  1:1084234/140‑1 (MQ=255)
                                                                                    ggtggAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATca                                        <  1:653758/140‑1 (MQ=255)
                                                                                     gtggAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATcaa                                       >  2:145363/1‑140 (MQ=255)
                                                                                     gtggAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATcaa                                       <  1:372786/140‑1 (MQ=255)
                                                                                      tggAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATcaac                                      <  2:150586/140‑1 (MQ=255)
                                                                                       ggAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATcaaca                                     <  1:863764/140‑1 (MQ=255)
                                                                                         agaTCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAg                                   <  2:441916/140‑1 (MQ=255)
                                                                                             cTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGa                               <  1:1036333/140‑1 (MQ=255)
                                                                                                  aaCCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAAt                          <  1:353834/140‑1 (MQ=255)
                                                                                                  aaCCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTAATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAAt                          >  2:370904/1‑140 (MQ=255)
                                                                                                   aCCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGaa                              >  1:1125215/1‑135 (MQ=255)
                                                                                                   aCCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGaa                              <  2:602555/135‑1 (MQ=255)
                                                                                                   aCCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGaa                              <  2:1125215/135‑1 (MQ=255)
                                                                                                   aCCCTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGaa                              >  1:602555/1‑135 (MQ=255)
                                                                                                     ccTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAg                       <  2:600779/140‑1 (MQ=255)
                                                                                                     ccTTGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAg                       <  2:1067576/140‑1 (MQ=255)
                                                                                                       ttGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCa                     <  2:688146/140‑1 (MQ=255)
                                                                                                       ttGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCa                     >  1:581078/1‑140 (MQ=255)
                                                                                                       ttGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCa                     <  1:1005963/140‑1 (MQ=255)
                                                                                                       ttGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCa                     <  1:28332/140‑1 (MQ=255)
                                                                                                       ttGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCa                     <  1:627773/140‑1 (MQ=255)
                                                                                                       ttGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCa                     <  1:588406/140‑1 (MQ=255)
                                                                                                        tGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCaa                    >  2:271133/1‑140 (MQ=255)
                                                                                                        tGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCaa                    >  2:1044728/1‑140 (MQ=255)
                                                                                                        tGCATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCaa                    >  1:432140/1‑140 (MQ=255)
                                                                                                          cATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATg                  <  1:1107588/140‑1 (MQ=255)
                                                                                                          cATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATg                  <  2:432140/140‑1 (MQ=255)
                                                                                                          cATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATg                  <  2:112714/140‑1 (MQ=255)
                                                                                                          cATCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATg                  >  1:853391/1‑140 (MQ=255)
                                                                                                           aTCAAAACCGGGTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATgg                 <  1:877777/140‑1 (MQ=255)
                                                                                                                     ggTTCCACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATGGCATATATAGc       >  1:145051/1‑140 (MQ=255)
                                                                                                                         ccACAATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATGGCATATATAGCCGct   <  2:158072/140‑1 (MQ=255)
                                                                                                                          cacaATCTCAAGCATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATGGCATATATAGCCGctc  >  1:245636/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                               
ATGTCATCACTGCTTTATGAAAGAGATGATTTAAGCGCCATTGATTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTTCAAACCCTTGCATCAAAACCGGGTTCCACAATCTCAAGTATCCCATCAGAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGTAATCTTTTCAATGACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATGGCATATATAGCCGCTC  >  NC_000913/2787873‑2788134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A