Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,990,363	T→C	intergenic (‑3/‑191)	yqeK ← / → ygeF	protein YqeK/protein YgeF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,990,363	0	T	C	98.2%	395.2 / ‑4.3	112	intergenic (‑3/‑191)	yqeK/ygeF	protein YqeK/protein YgeF
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (46/64); total (47/65)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 112 total aligned reads displayed.

TGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTG  >  NC_000913/2990232‑2990496

tgttTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTca                                                                                                                               >  1:848455/1‑140 (MQ=255)

tgttTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTca                                                                                                                               <  2:742384/140‑1 (MQ=255)

  tttGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTcaca                                                                                                                             >  2:417561/1‑140 (MQ=255)

       gTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACAttttt                                                                                                                        >  2:215824/1‑140 (MQ=255)

       gTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACAttttt                                                                                                                        >  1:543155/1‑140 (MQ=255)

       gTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACAttttt                                                                                                                        >  2:110161/1‑140 (MQ=255)

        tGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTa                                                                                                                       >  2:878672/1‑140 (MQ=255)

              cATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATCCCTCACATTTTTACCGTGa                                                                                                                 <  1:215824/140‑1 (MQ=255)

              cATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGa                                                                                                                 <  1:878672/140‑1 (MQ=255)

              cATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATAACTCACATTTTTACCGTGa                                                                                                                 <  2:883075/140‑1 (MQ=255)

               aTTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGAc                                                                                                                <  1:181292/140‑1 (MQ=255)

                ttCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATGTAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACt                                                                                                               <  1:664208/140‑1 (MQ=255)

                ttCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACt                                                                                                               <  2:567219/140‑1 (MQ=255)

                ttCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACt                                                                                                               <  1:358698/140‑1 (MQ=255)

                ttCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACt                                                                                                               <  1:1074760/140‑1 (MQ=255)

                   tcAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCGTGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGa                                                                                                            <  1:652028/140‑1 (MQ=255)

                     aGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATg                                                                                                          <  2:302326/140‑1 (MQ=255)

                      gCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGt                                                                                                         <  2:951945/140‑1 (MQ=255)

                        aTTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTa                                                                                                       <  1:1029021/140‑1 (MQ=255)

                         ttAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTAc                                                                                                      >  2:280488/1‑140 (MQ=255)

                         ttAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTAc                                                                                                      >  2:587834/1‑140 (MQ=255)

                          tAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACt                                                                                                     <  1:933166/140‑1 (MQ=255)

                          tAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACt                                                                                                     >  2:14929/1‑140 (MQ=255)

                           aaGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTa                                                                                                       <  1:1126809/137‑1 (MQ=255)

                           aaGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTa                                                                                                       >  2:1126809/1‑137 (MQ=255)

                             ggAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGtt                                                                                                  <  1:786558/140‑1 (MQ=255)

                             ggAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGtt                                                                                                  <  2:388537/140‑1 (MQ=255)

                              gAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTc                                                                                                 <  2:963211/140‑1 (MQ=255)

                               aaTTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCa                                                                                                >  1:200426/1‑140 (MQ=255)

                                    ttttAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCaataat                                                                                           <  1:14929/140‑1 (MQ=255)

                                    ttttAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCaataat                                                                                           <  1:1063102/140‑1 (MQ=255)

                                    ttttAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCaataat                                                                                           <  2:754603/140‑1 (MQ=255)

                                    ttttAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCaataac                                                                                           <  2:543155/140‑2 (MQ=255)

                                       tAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCAc                                                                                        <  1:334898/140‑1 (MQ=255)

                                       tAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCAc                                                                                        <  1:417561/140‑1 (MQ=255)

                                         aCGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCt                                                                                      <  2:513253/140‑1 (MQ=255)

                                                       ttCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCAc                                                                                        >  1:168246/1‑124 (MQ=255)

                                                       ttCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCAc                                                                                        <  2:168246/124‑1 (MQ=255)

                                                       ttCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTaa                                                                        >  1:893223/1‑140 (MQ=255)

                                                          tttttCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAAt                                                                     >  2:857559/1‑140 (MQ=255)

                                                             ttCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTaa                                                                  <  1:587834/140‑1 (MQ=255)

                                                             ttCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTaa                                                                  <  2:79704/140‑1 (MQ=255)

                                                                       aaTTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAAt                                                        <  1:280488/140‑1 (MQ=255)

                                                                           tACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGc                                                    <  1:100176/140‑1 (MQ=255)

                                                                           tACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGc                                                    <  1:497293/140‑1 (MQ=255)

                                                                               atatCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGAt                                                <  1:857559/140‑1 (MQ=255)

                                                                               atatCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGAt                                                <  1:648855/140‑1 (MQ=255)

                                                                               atatCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGAt                                                <  2:114615/140‑1 (MQ=255)

                                                                                     tGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          >  1:232834/1‑140 (MQ=255)

                                                                                     tGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          >  2:746694/1‑140 (MQ=255)

                                                                                     tGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          >  2:184126/1‑140 (MQ=255)

                                                                                     tGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          >  2:558137/1‑140 (MQ=255)

                                                                                       cATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAata                                        <  1:746694/140‑1 (MQ=255)

                                                                                          ataGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATaa                                              >  2:529992/1‑131 (MQ=255)

                                                                                          ataGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATaa                                              <  1:529992/131‑1 (MQ=255)

                                                                                          ataGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAg                                     >  2:509272/1‑140 (MQ=255)

                                                                                          ataGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAg                                     <  1:184126/140‑1 (MQ=255)

                                                                                          ataGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAg                                     >  1:259412/1‑140 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGAt                                                >  1:679196/1‑127 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGAt                                                <  2:679196/127‑1 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATa                                               >  1:395211/1‑128 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATa                                               <  2:395211/128‑1 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          <  1:1091961/133‑1 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          <  2:170240/133‑1 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          >  2:1091961/1‑133 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          >  1:170240/1‑133 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTc                                   >  1:1091501/1‑140 (MQ=255)

                                                                                            aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATAGAGTc                                   >  2:1040997/1‑140 (MQ=255)

                                                                                              aCCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGAt                                                <  1:574988/125‑1 (MQ=255)

                                                                                              aCCATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGAt                                                >  2:574988/1‑125 (MQ=255)

                                                                                               ccATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCAtt                                <  2:893223/140‑1 (MQ=255)

                                                                                                cATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTc                               >  2:839316/1‑140 (MQ=255)

                                                                                                cATTTCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTc                               >  2:15092/1‑140 (MQ=255)

                                                                                                  tttCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          >  1:673890/1‑127 (MQ=255)

                                                                                                  tttCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACaaa                                          <  2:673890/127‑1 (MQ=255)

                                                                                                  tttCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAata                                        >  1:276666/1‑129 (MQ=255)

                                                                                                  tttCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAata                                        <  2:276666/129‑1 (MQ=255)

                                                                                                  tttCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTc                                   <  2:308341/134‑1 (MQ=255)

                                                                                                  tttCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTc                                   >  1:308341/1‑134 (MQ=255)

                                                                                                   ttCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTAc                            >  1:136814/1‑140 (MQ=255)

                                                                                                    tCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACg                           >  1:1028972/1‑140 (MQ=255)

                                                                                                    tCATGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACg                           <  2:129183/140‑1 (MQ=255)

                                                                                                      aTGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTa                         <  2:1005638/140‑1 (MQ=255)

                                                                                                      aTGAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACC‑TCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTaa                        <  1:266322/140‑1 (MQ=255)

                                                                                                        gAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAAc                       >  2:778892/1‑140 (MQ=255)

                                                                                                        gAATCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAAc                       >  1:819633/1‑140 (MQ=255)

                                                                                                          aTCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGt                     >  2:579741/1‑140 (MQ=255)

                                                                                                          aTCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGt                     <  2:136814/140‑1 (MQ=255)

                                                                                                          aTCTGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGt                     <  1:558137/140‑1 (MQ=255)

                                                                                                             tGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACg                      >  2:23671/1‑136 (MQ=255)

                                                                                                             tGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACg                      <  1:23671/136‑1 (MQ=255)

                                                                                                             tGCGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGtctc                  >  2:941513/1‑140 (MQ=255)

                                                                                                               cGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATGGTCATTCTACGTAACGTCTCCa                >  2:160977/1‑140 (MQ=255)

                                                                                                               cGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCa                >  2:436314/1‑140 (MQ=255)

                                                                                                               cGAAAATTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCa                <  2:856729/140‑1 (MQ=255)

                                                                                                                  aaaTTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATaa             <  2:1028972/140‑1 (MQ=255)

                                                                                                                    aTTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAgg           <  1:110161/140‑1 (MQ=255)

                                                                                                                    aTTCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAgg           <  1:839316/140‑1 (MQ=255)

                                                                                                                     ttCAATGTCCATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGt          <  1:15092/140‑1 (MQ=255)

                                                                                                                             ccATTGCATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATGGTCATTCTACGTAACGTCTCCATAAGGTGATATTTg  <  1:160977/140‑1 (MQ=255)

TGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTG  >  NC_000913/2990232‑2990496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A