Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,020,790	C→T	A84V (GCG→GTG)	ygfM →	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,020,790	0	C	T	100.0%	210.8 / NA	61	A84V (GCG→GTG)	ygfM	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (33/28); total (33/28)

ACCCGTACCGATAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGCGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGCACTGGATGCTGAACTGG  >  NC_000913/3020654‑3020921

aCCCGTACCGATAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCt                                                                                                                                  >  1:588256/1‑140 (MQ=255)

       ccGATAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGaa                                                                                                                           <  1:1030804/140‑1 (MQ=255)

          aTAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGaa                                                                                                                           >  2:130376/1‑137 (MQ=255)

          aTAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGaa                                                                                                                           <  1:130376/137‑1 (MQ=255)

          aTAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGcc                                                                                                                        >  2:1011990/1‑140 (MQ=255)

          aTAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGcc                                                                                                                        >  2:90847/1‑140 (MQ=255)

          aTAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGcc                                                                                                                        >  2:719513/1‑140 (MQ=255)

          aTAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGcc                                                                                                                        >  1:113603/1‑140 (MQ=255)

            aaaaaGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCt                                                                                                                      >  2:660004/1‑140 (MQ=255)

            aaaaaGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCt                                                                                                                      >  1:919922/1‑140 (MQ=255)

                  aTTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGaa                                                                                                                           <  2:453254/129‑1 (MQ=255)

                  aTTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGaa                                                                                                                           <  2:983814/129‑1 (MQ=255)

                  aTTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGaa                                                                                                                           >  1:983814/1‑129 (MQ=255)

                  aTTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGaa                                                                                                                           >  1:453254/1‑129 (MQ=255)

                    tGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTg                                                                                                              <  2:113603/140‑1 (MQ=255)

                    tGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTg                                                                                                              >  1:365469/1‑140 (MQ=255)

                      ccATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGtt                                                                                                            <  2:588256/140‑1 (MQ=255)

                              ttACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACg                                                                                                    <  2:105749/140‑1 (MQ=255)

                                 cAGGATCTGGAACTGGACTGGGTTAACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCa                                                                                                 <  2:377044/140‑1 (MQ=255)

                                      tCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTCCTCACGCCa                                                                                                 >  2:730948/1‑135 (MQ=255)

                                      tCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCa                                                                                                 <  1:730948/135‑1 (MQ=255)

                                         ggAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTa                                                                                         <  1:107455/140‑1 (MQ=255)

                                              tggactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACg                                                                                                    <  1:1041503/124‑1 (MQ=255)

                                              tggactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACg                                                                                                    >  2:1041503/1‑124 (MQ=255)

                                              tggactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAg                                                                                    >  1:144073/1‑140 (MQ=255)

                                              tggactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAg                                                                                    <  1:348219/140‑1 (MQ=255)

                                              tggactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAg                                                                                    >  1:290154/1‑140 (MQ=255)

                                               ggactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGt                                                                                   <  2:919922/140‑1 (MQ=255)

                                               ggactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGt                                                                                   >  2:8110/1‑140 (MQ=255)

                                                gactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTc                                                                                  >  2:1075403/1‑140 (MQ=255)

                                                gactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTc                                                                                  >  2:314607/1‑140 (MQ=255)

                                                gactggGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTc                                                                                  >  1:390501/1‑140 (MQ=255)

                                                      gTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCAt                                                                            <  2:290154/140‑1 (MQ=255)

                                                        tGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATtg                                                                          <  1:719513/140‑1 (MQ=255)

                                                                 tAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGaaa                                                                 >  1:641078/1‑140 (MQ=255)

                                                                       tGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATcgccg                                                           <  2:641078/140‑1 (MQ=255)

                                                                        gCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATcgccgc                                                          >  1:916993/1‑140 (MQ=255)

                                                                         cACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCgccgcc                                                         >  2:654317/1‑140 (MQ=255)

                                                                         cACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCgccgcc                                                         >  2:995134/1‑140 (MQ=255)

                                                                         cACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCgccgcc                                                         >  1:442979/1‑140 (MQ=255)

                                                                          aCTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGccgccc                                                        <  2:390501/140‑1 (MQ=255)

                                                                            tGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGccgcccgc                                                      >  1:349498/1‑140 (MQ=255)

                                                                              cGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTATTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCa                                                    >  2:471235/1‑140 (MQ=255)

                                                                              cGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCa                                                    >  2:1131522/1‑140 (MQ=255)

                                                                                      cgcAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGa                                                 <  2:1022358/135‑1 (MQ=255)

                                                                                      cgcAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGa                                                 >  1:1022358/1‑135 (MQ=255)

                                                                                        cAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCg                                          >  1:1097289/1‑140 (MQ=255)

                                                                                          aTGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCCCGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGt                                        <  2:1060066/140‑1 (MQ=255)

                                                                                             tctcGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGCCCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGtgct                                     <  2:442979/140‑1 (MQ=255)

                                                                                              ctcGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAGGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGtgctg                                    <  1:90847/140‑1 (MQ=255)

                                                                                                  cTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTc                                <  1:1075403/140‑1 (MQ=255)

                                                                                                     gCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCg                             <  1:995134/140‑1 (MQ=255)

                                                                                                             tGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTc                                >  2:1117335/1‑129 (MQ=255)

                                                                                                             tGCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTc                                <  1:1117335/129‑1 (MQ=255)

                                                                                                              gCGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTgg                    <  1:314607/140‑1 (MQ=255)

                                                                                                               cGTGATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGc                   >  2:638135/1‑140 (MQ=255)

                                                                                                                  gATGCGCGATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGCACt                <  1:654317/140‑1 (MQ=255)

                                                                                                                       gcgATTTATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGCACTGGATg           <  1:885529/140‑1 (MQ=255)

                                                                                                                           tttATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGCACTGGATGCTGa       >  2:562606/1‑140 (MQ=255)

                                                                                                                            ttATTCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGCACTGGATGCTGaa      <  2:349498/140‑1 (MQ=255)

                                                                                                                                tCCTGCAGTGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGCACTGGATGCTGAACTgg  >  1:590943/1‑140 (MQ=255)

ACCCGTACCGATAAAAAGATTGCCATTTCCTTACAGGATCTGGAACTGGACTGGGTTGACTGGGATAACGGTGCACTGCGGATTGGCGCAATGTCTCGCTTGCAGCCACTGCGTGATGCGCGATTTATTCCTGCAGCGCTGCGTGAAGCCCTCGGTTTTGTTTACTCACGCCATGTTCGTAATCAGTCGACCATTGGTGGTGAAATCGCCGCCCGCCAGGAAGAGTCGGTGCTGCTTCCCGTCCTGTTGGCACTGGATGCTGAACTGG  >  NC_000913/3020654‑3020921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A