Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,042,827 C→T D108N (GAT→AAT)  yqfA ← hemolysin‑III family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,042,8270CT100.0% 235.8 / NA 66D108N (GAT→AAT) yqfAhemolysin‑III family protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (36/30);  total (36/30)

AGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATCCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCGAAGCGAGGAACAGCA  >  NC_000913/3042691‑3042961
                                                                                                                                        |                                                                                                                                      
aGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAg                                                                                                                                     >  1:119770/1‑140 (MQ=255)
     cagccagcCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCcca                                                                                                                                <  2:934777/140‑1 (MQ=255)
     cagccagcCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCcca                                                                                                                                <  2:711292/140‑1 (MQ=255)
       gccagccCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCccacc                                                                                                                              <  2:961899/140‑1 (MQ=255)
            cccATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCaa                                                                                                                         >  1:1116786/1‑140 (MQ=255)
                  gCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACgg                                                                                                                   <  2:709330/140‑1 (MQ=255)
                  gCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACgg                                                                                                                   >  1:224468/1‑140 (MQ=255)
                        tAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTa                                                                                                             >  2:232951/1‑140 (MQ=255)
                           gTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGt                                                                                                          >  2:163650/1‑140 (MQ=255)
                           gTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGt                                                                                                          >  1:618159/1‑140 (MQ=255)
                           gTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGt                                                                                                          >  1:234605/1‑140 (MQ=255)
                              aCCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTcc                                                                                                       >  2:278873/1‑140 (MQ=255)
                                  gagaTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCa                                                                                                   <  1:616441/140‑1 (MQ=255)
                                    gaTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGC‑AAAACGGCGTGTAGGTTCCGGCAATc                                                                                                <  1:424215/140‑1 (MQ=255)
                                     aTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                <  1:278873/140‑1 (MQ=255)
                                     aTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                <  2:397231/140‑1 (MQ=255)
                                     aTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                <  2:234605/140‑1 (MQ=255)
                                     aTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                <  2:1116786/140‑1 (MQ=255)
                                     aTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                >  1:804434/1‑140 (MQ=255)
                                     aTAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                <  1:404653/140‑1 (MQ=255)
                                      tAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                >  1:756527/1‑139 (MQ=255)
                                      tAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATc                                                                                                <  2:756527/139‑1 (MQ=255)
                                       aaaaTTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCaa                                                                                              <  1:174664/140‑1 (MQ=255)
                                       aaaaTTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCaa                                                                                              <  1:163650/140‑1 (MQ=255)
                                            tttGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGt                                                                                         <  2:618159/140‑1 (MQ=255)
                                                aaTCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAAt                                                                                     >  2:55276/1‑140 (MQ=255)
                                                                tCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAAt                                                                     >  2:263916/1‑140 (MQ=255)
                                                                  aGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAAttt                                                                   >  2:379691/1‑140 (MQ=255)
                                                                       aaaCAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCa                                                              >  2:918177/1‑140 (MQ=255)
                                                                            gAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCcac                                                         >  2:325416/1‑140 (MQ=255)
                                                                              aTACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACAt                                                       >  1:87257/1‑140 (MQ=255)
                                                                              aTACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACAt                                                       >  1:911862/1‑140 (MQ=255)
                                                                                  ccAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACAttttt                                                   >  1:437416/1‑140 (MQ=255)
                                                                                    aGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGc                                                 <  2:911862/140‑1 (MQ=255)
                                                                                    aGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGGAAATAGCGCGATGGTTAAATTTCTTGAGCCACATTTTCGc                                                 >  2:694709/1‑140 (MQ=255)
                                                                                     gCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGcc                                                <  1:985122/140‑1 (MQ=255)
                                                                                     gCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGcc                                                <  1:312547/140‑1 (MQ=255)
                                                                                       aaTGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCca                                                          <  2:76066/128‑1 (MQ=255)
                                                                                       aaTGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCca                                                          >  1:76066/1‑128 (MQ=255)
                                                                                       aaTGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCg                                              <  2:804434/140‑1 (MQ=255)
                                                                                       aaTGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCg                                              <  2:87257/140‑1 (MQ=255)
                                                                                       aaTGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCg                                              >  2:921579/1‑140 (MQ=255)
                                                                                       aaTGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCg                                              >  1:107033/1‑140 (MQ=255)
                                                                                         tGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGtt                                            >  2:294911/1‑140 (MQ=255)
                                                                                           ccAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTtga                                          >  2:312498/1‑140 (MQ=255)
                                                                                           ccAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTtga                                          >  2:566413/1‑140 (MQ=255)
                                                                                           ccAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTtga                                          >  2:943013/1‑140 (MQ=255)
                                                                                                  ccAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGaa                                   <  1:694709/140‑1 (MQ=255)
                                                                                                   cAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAAt                                  >  2:383328/1‑140 (MQ=255)
                                                                                                   cAGATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAAt                                  >  2:135861/1‑140 (MQ=255)
                                                                                                     gATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGaa                                   <  1:173348/137‑1 (MQ=255)
                                                                                                     gATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGaa                                   >  2:173348/1‑137 (MQ=255)
                                                                                                     gATAACAATCATCAACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATgg                                <  2:224468/140‑1 (MQ=255)
                                                                                                               atcaACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATagag                      >  1:493275/1‑140 (MQ=255)
                                                                                                               atcaACCCGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATagag                      >  1:710323/1‑140 (MQ=255)
                                                                                                                    cccGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCg                 >  2:58233/1‑140 (MQ=255)
                                                                                                                    cccGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCg                 >  2:204170/1‑140 (MQ=255)
                                                                                                                    cccGCGCGCTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCg                 >  2:92880/1‑140 (MQ=255)
                                                                                                                       gcgcgcTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCGAAg              <  1:918177/140‑1 (MQ=255)
                                                                                                                        cgcgcTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGa                           <  1:1088539/126‑1 (MQ=255)
                                                                                                                        cgcgcTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGa                           >  2:1088539/1‑126 (MQ=255)
                                                                                                                           gcTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGCTGATGAGGAATGGCGTGATAGAGCGTCGAAGCGAg          >  1:106615/1‑140 (MQ=255)
                                                                                                                            cTAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCGAAGCGAgg         <  1:55276/140‑1 (MQ=255)
                                                                                                                             tAACGGAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCGAAGCGAGGa        <  2:710323/140‑1 (MQ=255)
                                                                                                                                 ggAGAATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCGAAGCGAGGAAcag    <  1:204170/140‑1 (MQ=255)
                                                                                                                                   agaATTCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCGAAGCGAGGAAcagca  <  1:383328/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
AGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATCCAGCCCCACCAGCAAAAACGGCGTGTAGGTTCCGGCAATCAACAGGTAAATAGCGCAATGGTCAAATTTCTTCAGCCACATTTTTGCCCGTTGATGAGGAATGGCGTGATAGAGCGTCGAAGCGAGGAACAGCA  >  NC_000913/3042691‑3042961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A