Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,150,442 C→T Q261* (CAA→TAA)  yghA → NADP(+)‑dependent aldehyde reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,150,4420CT100.0% 243.1 / NA 72Q261* (CAA→TAA) yghANADP(+)‑dependent aldehyde reductase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (28/44);  total (28/44)

GGTCGCGGAGAAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGCAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCA  >  NC_000913/3150309‑3150578
                                                                                                                                     |                                                                                                                                        
ggTCGCGGAGAAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACcgg                                                                                                                                    <  1:161903/140‑1 (MQ=255)
ggTCGCGGAGAAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACcgg                                                                                                                                    <  1:949738/140‑1 (MQ=255)
  tCGCGGAGAAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACcggcg                                                                                                                                  >  2:655218/1‑140 (MQ=255)
  tCGCGGAGAAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACcgg                                                                                                                                    <  2:113805/138‑1 (MQ=255)
  tCGCGGAGAAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACcgg                                                                                                                                    >  1:113805/1‑138 (MQ=255)
       gagaAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACt                                                                                                                             <  1:1120554/140‑1 (MQ=255)
       gagaAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACt                                                                                                                             <  1:538760/140‑1 (MQ=255)
         gaAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTgg                                                                                                                           <  2:451170/140‑1 (MQ=255)
          aaaGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGc                                                                                                                          <  2:603073/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGctc                                                                                                                        <  2:843701/140‑3 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  2:599722/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  2:164560/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  2:276665/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  2:457552/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  1:278021/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  1:239943/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  1:868136/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  2:653471/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  2:78960/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  1:598149/140‑1 (MQ=255)
            aGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  1:854975/140‑1 (MQ=255)
            aGGTATTCCGGTGAAATTTGTCGCGCCAGGCCCGATCCTGGCAGCACTGCAAATTTTCGGCGGGCAAACGCAGGATAAGGACCCGGAGTTTTGTCAACAAACCGCGATGAAACGTGCGGGGTAACCGGTGGGACTGGccc                                                                                                                        <  2:258703/140‑1 (MQ=255)
              gTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCt                                                                                                                      <  2:86506/140‑1 (MQ=255)
                aTTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        >  2:824871/1‑136 (MQ=255)
                aTTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  1:824871/136‑1 (MQ=255)
                aTTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGt                                                                                                                    <  1:655218/140‑1 (MQ=255)
                 ttCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGta                                                                                                                   <  1:815487/140‑1 (MQ=255)
                    gggTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTatat                                                                                                                >  1:258703/1‑140 (MQ=255)
                    gggTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTatat                                                                                                                >  2:57317/1‑140 (MQ=255)
                      gTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        >  1:95484/1‑130 (MQ=255)
                      gTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  2:95484/130‑1 (MQ=255)
                      gTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATgg                                                                                                              >  1:100066/1‑139 (MQ=255)
                      gTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTACCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGAGGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGt                                                                                                              >  2:1056959/1‑140 (MQ=255)
                         aaTATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        >  2:376313/1‑127 (MQ=255)
                         aaTATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGccc                                                                                                                        <  1:376313/127‑1 (MQ=255)
                         aaTATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGc                                                                                                                          <  1:343525/125‑1 (MQ=255)
                         aaTATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGc                                                                                                                          >  2:343525/1‑125 (MQ=255)
                            atTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCt                                                                                                        <  1:57317/140‑1 (MQ=255)
                                tCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGc                                                                                                     >  1:349850/1‑139 (MQ=255)
                                tCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGc                                                                                                     <  2:349850/139‑1 (MQ=255)
                                tCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCa                                                                                                    >  1:677272/1‑140 (MQ=255)
                                          cccGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGt                                                                                          <  1:499251/140‑1 (MQ=255)
                                           ccGATCTGGACAGCACTGC‑AATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCg                                                                                        <  2:710217/140‑1 (MQ=255)
                                              aTCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCCAg                                                                                      >  1:658614/1‑140 (MQ=255)
                                                  ggACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTAc                                                                                  >  1:569327/1‑140 (MQ=255)
                                                   gACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACg                                                                                 >  1:576956/1‑140 (MQ=255)
                                                    aCAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTACCCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGt                                                                                <  2:1123670/140‑1 (MQ=255)
                                                    aCAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGt                                                                                <  1:160392/140‑1 (MQ=255)
                                                    aCAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGt                                                                                <  2:1095363/140‑1 (MQ=255)
                                                        cACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCAcc                                                                            >  2:1071907/1‑140 (MQ=255)
                                                        cACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCAcc                                                                            >  2:701097/1‑140 (MQ=255)
                                                        cACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCAcc                                                                            >  1:16514/1‑140 (MQ=255)
                                                         aCTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCg                                                                           <  1:1071907/140‑1 (MQ=255)
                                                             cAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGa                                                                       >  1:725669/1‑140 (MQ=255)
                                                             cAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTCTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGa                                                                       <  2:71420/140‑1 (MQ=255)
                                                                                               cGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGt                                     >  1:196097/1‑140 (MQ=255)
                                                                                               cGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGt                                     >  1:112574/1‑140 (MQ=255)
                                                                                               cGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGt                                     >  1:613471/1‑140 (MQ=255)
                                                                                               cGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTACACGGCGTGTGCGGCGGCGAGCATTTAGGt                                     >  1:156432/1‑140 (MQ=255)
                                                                                                gCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGtt                                    <  2:196097/140‑1 (MQ=255)
                                                                                                    tttGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTaaaa                                >  2:838826/1‑140 (MQ=255)
                                                                                                     ttGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTaaaaa                               >  1:138208/1‑140 (MQ=255)
                                                                                                      tGGTCAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTaaaaaa                              >  1:150798/1‑140 (MQ=255)
                                                                                                          cAGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGc                          <  2:569327/140‑1 (MQ=255)
                                                                                                           aGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGcc                         <  2:677272/140‑1 (MQ=255)
                                                                                                           aGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGcc                         <  2:16514/140‑1 (MQ=255)
                                                                                                           aGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGcc                         <  2:138208/140‑1 (MQ=255)
                                                                                                           aGCAAACGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGGTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGcc                         <  2:100066/140‑1 (MQ=255)
                                                                                                              aaaCGCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCgg                      >  1:410590/1‑140 (MQ=255)
                                                                                                                  gCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGcc                         >  2:580053/1‑133 (MQ=255)
                                                                                                                  gCCGATGAAACGTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGcc                         <  1:580053/133‑1 (MQ=255)
                                                                                                                             gTGCGGGGTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAAcc       <  1:1056959/140‑1 (MQ=255)
                                                                                                                                  gggTAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGca  <  2:410590/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
GGTCGCGGAGAAAGGTATTCGGGTGAATATTGTCGCGCCAGGCCCGATCTGGACAGCACTGCAAATTTCCGGCGGACAAACGCAGGATAAGATCCCGCAGTTTGGTCAGCAAACGCCGATGAAACGTGCGGGGCAACCGGCGGAACTGGCCCCTGTATATGTTTATCTGGCAAGTCAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCA  >  NC_000913/3150309‑3150578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A