Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,429,258	A→G	Y8C (TAC→TGC)	yrdA →	protein YrdA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,429,258	0	A	G	100.0%	437.0 / NA	122	Y8C (TAC→TGC)	yrdA	protein YrdA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (67/55); total (67/55)

Only 100 of 123 total aligned reads displayed.

TTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATACCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTATGTAC  >  NC_000913/3429127‑3429392

ttttGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATc                                                                                                                                >  1:647157/1‑140 (MQ=255)

       gcAATCGCACACAAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTcc                                                                                                                         <  1:1048446/140‑1 (MQ=255)

           tCGCACACAAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACaa                                                                                                                     >  1:76592/1‑140 (MQ=255)

                cacaAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCgg                                                                                                                >  1:140398/1‑140 (MQ=255)

                 acaAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGt                                                                                                               <  2:973568/140‑1 (MQ=255)

                 acaAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGt                                                                                                               <  1:239964/140‑1 (MQ=255)

                     aaCGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGCAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAgc                                                                                                           >  2:94409/1‑140 (MQ=255)

                        ggTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGcgcg                                                                                                        >  1:611184/1‑140 (MQ=255)

                          tGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTa                                                                                                      <  1:94409/140‑1 (MQ=255)

                           gCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTaa                                                                                                     <  2:876928/140‑1 (MQ=255)

                             ttttttGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATg                                                                                                   >  1:918002/1‑140 (MQ=255)

                              tttttGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAGTCGGTCAGCGCGTAATGa                                                                                                  <  1:817249/140‑1 (MQ=255)

                                    cATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATcgacg                                                                                            >  2:704684/1‑140 (MQ=255)

                                    cATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATcgacg                                                                                            >  2:645343/1‑140 (MQ=255)

                                      tACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGAt                                                                                          >  2:796986/1‑140 (MQ=255)

                                       aCTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATa                                                                                         >  2:152548/1‑140 (MQ=255)

                                          aaaaGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCa                                                                                      <  2:76592/140‑1 (MQ=255)

                                                  tGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTg                                                                              >  1:190261/1‑140 (MQ=255)

                                                   gCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCTGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGa                                                                             >  2:1047782/1‑140 (MQ=255)

                                                   gCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCa                                                                                      >  2:1015620/1‑131 (MQ=255)

                                                   gCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCa                                                                                      <  1:1015620/131‑1 (MQ=255)

                                                   gCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGa                                                                             >  2:1057825/1‑140 (MQ=255)

                                                   gCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGa                                                                             >  1:376553/1‑140 (MQ=255)

                                                   gCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGa                                                                             >  2:661638/1‑140 (MQ=255)

                                                         ggCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTTGTGATTGGTg                                                                       >  1:995442/1‑140 (MQ=255)

                                                         ggCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTg                                                                       >  1:195077/1‑140 (MQ=255)

                                                         ggCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTg                                                                       >  2:128996/1‑140 (MQ=255)

                                                         ggCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTg                                                                       >  1:651823/1‑140 (MQ=255)

                                                              ataatGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGtt                                                                  >  2:428442/1‑140 (MQ=255)

                                                              ataatGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGtt                                                                  >  1:863668/1‑140 (MQ=255)

                                                                   gCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCt                                                             <  1:796986/140‑1 (MQ=255)

                                                                   gCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCt                                                             <  1:818801/140‑1 (MQ=255)

                                                                    cccccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTg                                                            >  1:292663/1‑140 (MQ=255)

                                                                    cccccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTg                                                            >  2:42274/1‑140 (MQ=255)

                                                                    cccccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTg                                                            >  1:312612/1‑140 (MQ=255)

                                                                    cccccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTg                                                            >  2:61795/1‑140 (MQ=255)

                                                                     ccccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTgg                                                           >  1:902802/1‑140 (MQ=255)

                                                                     ccccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTgg                                                           >  2:348210/1‑140 (MQ=255)

                                                                       ccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCt                                                         >  2:797155/1‑140 (MQ=255)

                                                                       ccAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCt                                                         >  2:864148/1‑140 (MQ=255)

                                                                         aaaGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtga                                                       <  1:864148/140‑1 (MQ=255)

                                                                         aaaGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtga                                                       <  1:704684/140‑1 (MQ=255)

                                                                         aaaGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtga                                                       <  2:190261/140‑1 (MQ=255)

                                                                         aaaGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtga                                                       <  1:680805/140‑1 (MQ=255)

                                                                         aaaGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtga                                                       <  2:590634/140‑1 (MQ=255)

                                                                         aaaGTCAATAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtga                                                       <  1:678890/140‑1 (MQ=255)

                                                                          aaGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtgat                                                      <  2:77910/140‑1 (MQ=255)

                                                                           aGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCtgatg                                                     <  1:187939/140‑1 (MQ=255)

                                                                               tttAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGAtgt                                                 >  1:774803/2‑140 (MQ=255)

                                                                                      aaTCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATc                                          >  2:133129/1‑140 (MQ=255)

                                                                                      aaTCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATc                                          >  2:888105/1‑140 (MQ=255)

                                                                                       aTCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCt                                         >  2:305795/1‑140 (MQ=255)

                                                                                       aTCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCt                                         >  2:207135/1‑140 (MQ=255)

                                                                                       aTCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCt                                         >  1:648484/1‑140 (MQ=255)

                                                                                       aTCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCt                                         >  1:926479/1‑140 (MQ=255)

                                                                                         cATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTgg                                       >  2:393981/1‑140 (MQ=255)

                                                                                           tttATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGcc                                     >  2:587141/1‑140 (MQ=255)

                                                                                              aTTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCt                                  >  1:148034/1‑140 (MQ=255)

                                                                                               ttGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTc                                 <  2:648484/140‑1 (MQ=255)

                                                                                                  cTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGtt                              >  1:605875/1‑140 (MQ=255)

                                                                                                  cTGAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGtt                              <  2:210598/140‑1 (MQ=255)

                                                                                                  cTGAGGTAAGTATGTCTGATGGTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGtt                              >  2:367043/1‑140 (MQ=255)

                                                                                                   tGAGGGAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTtg                             >  2:691189/1‑140 (MQ=255)

                                                                                                    gAGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTtgt                            <  1:348210/140‑1 (MQ=255)

                                                                                                     aGGTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTtgtg                           >  1:499959/1‑140 (MQ=255)

                                                                                                      ggTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTtgtg                           >  2:989779/1‑139 (MQ=255)

                                                                                                      ggTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGa                          >  2:832499/1‑140 (MQ=255)

                                                                                                      ggTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGa                          >  1:615166/1‑140 (MQ=255)

                                                                                                       gTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGAt                         <  1:133129/140‑1 (MQ=255)

                                                                                                       gTAAGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGAt                         <  1:1047782/140‑1 (MQ=255)

                                                                                                          aGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCg                      <  2:140398/140‑1 (MQ=255)

                                                                                                          aGTATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCg                      >  2:89271/1‑140 (MQ=255)

                                                                                                            tATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTg                    <  1:691189/140‑1 (MQ=255)

                                                                                                            tATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTg                    <  1:411832/140‑1 (MQ=255)

                                                                                                            tATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTg                    <  1:647919/140‑1 (MQ=255)

                                                                                                            tATGTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTg                    <  2:195077/140‑1 (MQ=255)

                                                                                                               gTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGgag                 <  1:89271/140‑1 (MQ=255)

                                                                                                               gTCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGgag                 >  1:190833/1‑140 (MQ=255)

                                                                                                                tCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGgaga                >  2:45799/1‑140 (MQ=255)

                                                                                                                tCTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGgaga                <  1:532594/140‑1 (MQ=255)

                                                                                                                 cTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTtgtg                           <  1:1017968/128‑1 (MQ=255)

                                                                                                                 cTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTtgtg                           >  2:1017968/1‑128 (MQ=255)

                                                                                                                 cTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTgg                   <  2:420252/136‑1 (MQ=255)

                                                                                                                 cTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGAt               >  2:477561/1‑140 (MQ=255)

                                                                                                                 cTGATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGAt               >  1:131016/1‑140 (MQ=255)

                                                                                                                   gATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGt             <  2:312612/140‑1 (MQ=255)

                                                                                                                   gATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGt             <  2:918002/140‑1 (MQ=255)

                                                                                                                   gATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGt             <  1:45799/140‑1 (MQ=255)

                                                                                                                   gATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGt             <  1:61795/140‑1 (MQ=255)

                                                                                                                   gATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGt             <  1:752371/140‑1 (MQ=255)

                                                                                                                   gATGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGt             <  2:376553/140‑1 (MQ=255)

                                                                                                                    aTGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTa            >  1:396510/1‑140 (MQ=255)

                                                                                                                    aTGTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTa            >  1:684051/1‑140 (MQ=255)

                                                                                                                      gTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACa          >  1:567866/1‑140 (MQ=255)

                                                                                                                      gTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACa          <  1:1057825/140‑1 (MQ=255)

                                                                                                                      gTTTTACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACa          <  2:396510/140‑1 (MQ=255)

                                                                                                                        tttACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACAtt        <  1:393981/140‑1 (MQ=255)

                                                                                                                         ttACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTa       >  1:35591/1‑140 (MQ=255)

                                                                                                                          tACGCCCATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTAt      >  1:548731/1‑140 (MQ=255)

                                                                                                                              cccATGCCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTATGTAc  >  2:410613/1‑140 (MQ=255)

TTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTAAAAGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTACGCCCATACCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTATGTAC  >  NC_000913/3429127‑3429392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A