Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,541,548 A→G D381G (GAC→GGC)  feoB → Fe(2(+)) transporter FeoB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,541,5480AG100.0% 347.7 / NA 97D381G (GAC→GGC) feoBFe(2(+)) transporter FeoB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (53/44);  total (53/44)

CTATCTTCCTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGACCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCTGATGACCATCATG  >  NC_000913/3541413‑3541681
                                                                                                                                       |                                                                                                                                     
cTATCTTCCTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGt                                                                                                                                   <  2:630957/140‑1 (MQ=255)
cTATCTTCCTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGt                                                                                                                                   >  2:634343/1‑140 (MQ=255)
     ttCCTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGAt                                                                                                                              >  2:801797/1‑140 (MQ=255)
      tCCTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCg                                                                                                                                    <  2:253800/133‑1 (MQ=255)
      tCCTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCg                                                                                                                                    >  1:253800/1‑133 (MQ=255)
        cTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCa                                                                                                                           >  1:182048/1‑140 (MQ=255)
           gCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGgc                                                                                                                        <  2:59085/140‑1 (MQ=255)
            cccAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGgcg                                                                                                                       <  1:599669/140‑1 (MQ=255)
             ccAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGgcgc                                                                                                                      >  2:893616/1‑140 (MQ=255)
             ccAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGgcgc                                                                                                                      >  1:395161/1‑140 (MQ=255)
                       ggTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGcc                                                                                                            >  1:25816/1‑140 (MQ=255)
                       ggTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGcc                                                                                                            >  1:848895/1‑140 (MQ=255)
                           gcggcATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCgggg                                                                                                        >  1:331868/1‑140 (MQ=255)
                           gcggcATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCgggg                                                                                                        >  1:396740/1‑140 (MQ=255)
                           gcggcATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCgggg                                                                                                        <  1:893616/140‑1 (MQ=255)
                             ggcATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGaa                                                                                                      <  2:242475/140‑1 (MQ=255)
                                         gTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGcc                                                                                          >  1:844915/1‑140 (MQ=255)
                                          tgctgcCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCg                                                                                         >  2:642565/1‑140 (MQ=255)
                                          tgctgcCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCg                                                                                         >  1:939370/1‑140 (MQ=255)
                                          tgctgcCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCg                                                                                         >  1:60812/1‑140 (MQ=255)
                                            ctgcCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCt                                                                                       >  1:828568/1‑140 (MQ=255)
                                              gcCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGa                                                                                     >  2:755696/1‑140 (MQ=255)
                                               ccACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGAt                                                                                    >  2:416135/1‑140 (MQ=255)
                                                 aCTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGAtcg                                                                                  >  2:1111988/1‑140 (MQ=255)
                                                      tGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGtcggt                                                                             >  2:684443/1‑140 (MQ=255)
                                                           cAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGtcggtttcgg                                                                        <  1:416135/140‑1 (MQ=255)
                                                           cAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGtcggtttcgg                                                                        <  1:749397/140‑1 (MQ=255)
                                                             gATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGtcggtttcggtt                                                                      >  2:1106255/1‑140 (MQ=255)
                                                                tGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTa                                                                   >  2:439060/1‑140 (MQ=255)
                                                                     tgatgTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTa                                                              <  1:689966/140‑1 (MQ=255)
                                                                      gatgTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTAc                                                             <  1:1106255/140‑1 (MQ=255)
                                                                      gatgTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTAc                                                             <  2:946736/140‑1 (MQ=255)
                                                                      gatgTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTAc                                                             <  1:649757/140‑1 (MQ=255)
                                                                        tgTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCg                                                           <  2:1095886/140‑1 (MQ=255)
                                                                        tgTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCg                                                           <  1:634343/140‑1 (MQ=255)
                                                                        tgTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCg                                                           >  1:1095886/1‑140 (MQ=255)
                                                                             cTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGt                                                      <  2:396740/140‑1 (MQ=255)
                                                                              tGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTa                                                     <  2:536748/140‑1 (MQ=255)
                                                                              tGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTa                                                     <  1:642565/140‑1 (MQ=255)
                                                                                 tCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATg                                                  >  1:730585/1‑140 (MQ=255)
                                                                                  ccTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATgg                                                 >  2:699735/1‑140 (MQ=255)
                                                                                  ccTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATgg                                                 >  2:738700/1‑140 (MQ=255)
                                                                                  ccTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATgg                                                 >  2:192330/1‑140 (MQ=255)
                                                                                  ccTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATgg                                                 >  1:1068441/1‑140 (MQ=255)
                                                                                   ctctCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATggg                                                <  2:848895/140‑1 (MQ=255)
                                                                                    tctcCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAAt                                                   <  2:1095953/136‑1 (MQ=255)
                                                                                    tctcCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAAt                                                   >  1:1095953/1‑136 (MQ=255)
                                                                                    tctcCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGt                                               >  1:967381/1‑140 (MQ=255)
                                                                                     ctcCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTg                                              >  2:382956/1‑140 (MQ=255)
                                                                                     ctcCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTg                                              >  2:952153/1‑140 (MQ=255)
                                                                                     ctcCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTg                                              >  1:46422/1‑140 (MQ=255)
                                                                                      tccttcctTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGc                                             >  1:967685/1‑140 (MQ=255)
                                                                                       ccttccttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCa                                            >  2:857767/1‑140 (MQ=255)
                                                                                         ttccttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACg                                          <  2:626488/140‑1 (MQ=255)
                                                                                         ttccttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACg                                          <  2:395161/140‑1 (MQ=255)
                                                                                          tccttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGt                                         >  1:1071643/1‑140 (MQ=255)
                                                                                          tccttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGt                                         <  2:182048/140‑1 (MQ=255)
                                                                                           ccttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGATGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTa                                        >  2:1010616/1‑140 (MQ=255)
                                                                                            cttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTAc                                       <  2:1071643/140‑1 (MQ=255)
                                                                                            cttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTAc                                       <  2:710770/140‑1 (MQ=255)
                                                                                            cttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTAc                                       <  1:605228/140‑1 (MQ=255)
                                                                                            cttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTAc                                       <  2:828568/140‑1 (MQ=255)
                                                                                            cttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTAc                                       <  1:709368/140‑1 (MQ=255)
                                                                                            cttGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTAc                                       <  2:134272/140‑1 (MQ=255)
                                                                                              tGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGc                                     <  2:76621/140‑1 (MQ=255)
                                                                                                     tCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGc                              >  2:902149/1‑140 (MQ=255)
                                                                                                     tCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGc                              >  2:808359/1‑140 (MQ=255)
                                                                                                     tCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGc                              >  2:796272/1‑140 (MQ=255)
                                                                                                     tCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGc                              >  1:583744/1‑140 (MQ=255)
                                                                                                     tCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGCAGGTAATGGGAGCACGTACGCCTGATGc                              >  2:627564/1‑140 (MQ=255)
                                                                                                      ccGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCa                             <  2:844915/140‑1 (MQ=255)
                                                                                                      ccGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCa                             <  1:812431/140‑1 (MQ=255)
                                                                                                       cGGGTATATGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCAc                            >  2:698927/1‑140 (MQ=255)
                                                                                                             tatGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTg                      <  1:952153/140‑1 (MQ=255)
                                                                                                             tatGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTg                      <  1:116835/140‑1 (MQ=255)
                                                                                                               tGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGaa                    >  2:695374/1‑140 (MQ=255)
                                                                                                               tGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGaa                    >  1:930788/1‑140 (MQ=255)
                                                                                                               tGGCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGaa                    <  2:811690/140‑1 (MQ=255)
                                                                                                                ggCGCGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAAc                   <  1:587117/140‑1 (MQ=255)
                                                                                                                 gcgcGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACg                  >  1:70873/1‑140 (MQ=255)
                                                                                                                 gcgcGTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACg                  >  2:553209/1‑140 (MQ=255)
                                                                                                                   gcgTGCGGCTTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTc                >  1:719329/1‑140 (MQ=255)
                                                                                                                   gcgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGaa                    <  1:827220/136‑1 (MQ=255)
                                                                                                                   gcgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGaa                    >  2:827220/1‑136 (MQ=255)
                                                                                                                   gcgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTc                >  1:425364/1‑140 (MQ=255)
                                                                                                                   gcgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTc                >  2:311632/1‑140 (MQ=255)
                                                                                                                   gcgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTc                >  1:1096402/1‑140 (MQ=255)
                                                                                                                    cgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGaa                    >  1:649202/1‑135 (MQ=255)
                                                                                                                    cgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGaa                    <  2:649202/135‑1 (MQ=255)
                                                                                                                    cgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCt               >  1:934166/1‑140 (MQ=255)
                                                                                                                    cgTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCt               <  1:329105/140‑1 (MQ=255)
                                                                                                                     gTGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCtg              <  1:1111988/140‑1 (MQ=255)
                                                                                                                      tGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCtga             >  1:20332/1‑140 (MQ=255)
                                                                                                                      tGCGGCGTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCtga             <  1:382956/140‑1 (MQ=255)
                                                                                                                       gcggcgTTTGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCtgat            <  1:448470/140‑1 (MQ=255)
                                                                                                                             tttGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCTGATGACcat      <  2:60812/140‑1 (MQ=255)
                                                                                                                             tttGTGATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCTGATGACcat      <  1:684443/140‑1 (MQ=255)
                                                                                                                                 tgATGGGCCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCTGATGACCATCatg  <  1:627564/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
CTATCTTCCTCGCCCAGGGCCTGGGTGGCGGCATTAACACCGTGCTGCCACTGGTGCCGCAGATTGGCATGATGTACCTGTTCCTCTCCTTCCTTGAGGACTCCGGGTATATGGCGCGTGCGGCGTTTGTGATGGACCGTCTGATGCAGGCGCTGGGCTTGCCGGGGAAATCCTTTGTGCCGCTGATCGTCGGTTTCGGTTGTAACGTACCGTCGGTAATGGGTGCACGTACGCTTGATGCACCGCGTGAACGTCTGATGACCATCATG  >  NC_000913/3541413‑3541681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A