Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,589,257 C→T T257T (ACG→ACA)  ugpE ← sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,589,2570CT100.0% 264.9 / NA 76T257T (ACG→ACA) ugpEsn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (39/37);  total (39/37)

TAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACAAATACTGATT  >  NC_000913/3589120‑3589391
                                                                                                                                         |                                                                                                                                      
tAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAgtgt                                                                                                                                      >  2:694921/1‑140 (MQ=255)
        tGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAacaaca                                                                                                                              >  2:509134/1‑140 (MQ=255)
        tGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAacaaca                                                                                                                              >  1:360636/1‑140 (MQ=255)
        tGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAacaaca                                                                                                                              >  2:1075571/1‑140 (MQ=255)
            ttttACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGc                                                                                                                          <  1:15045/140‑1 (MQ=255)
               tACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGccac                                                                                                                       >  1:885691/1‑140 (MQ=255)
                aCCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGccacc                                                                                                                      >  1:912903/1‑140 (MQ=255)
                 ccATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGccacca                                                                                                                     <  1:802677/140‑1 (MQ=255)
                    tCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTTTTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCa                                                                                                                  >  1:57473/1‑140 (MQ=255)
                    tCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCa                                                                                                                  >  1:833953/1‑140 (MQ=255)
                    tCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCa                                                                                                                  >  2:459999/1‑140 (MQ=255)
                         gCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCTCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAacaaca                                                                                                                              <  2:782814/123‑1 (MQ=255)
                         gCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAacaaca                                                                                                                              >  1:782814/1‑123 (MQ=255)
                         gCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAg                                                                                                             >  1:1065951/1‑140 (MQ=255)
                          cTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGt                                                                                                            >  2:806831/1‑140 (MQ=255)
                           ttttGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGtt                                                                                                           >  2:294005/1‑140 (MQ=255)
                             ttGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATTGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCa                                                                                                                  <  2:1014702/131‑1 (MQ=255)
                             ttGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATTGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCa                                                                                                                  >  1:1014702/1‑131 (MQ=255)
                               ggTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCAt                                                                                                       >  1:216029/1‑140 (MQ=255)
                                   aCTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCg                                                                                                   <  2:438940/140‑1 (MQ=255)
                                     tGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgtg                                                                                                 <  1:459999/140‑1 (MQ=255)
                                     tGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCAATTCCgtg                                                                                                 <  2:1065951/140‑1 (MQ=255)
                                       ccTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgtggt                                                                                               >  2:730845/1‑140 (MQ=255)
                                       ccTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgtggt                                                                                               >  2:988483/1‑140 (MQ=255)
                                        cTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgtggtg                                                                                              <  1:730845/140‑1 (MQ=255)
                                        cTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCgtggtg                                                                                              <  2:833953/140‑1 (MQ=255)
                                         tGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGc                                                                                             >  1:125966/1‑140 (MQ=255)
                                          gTAATTTCAGTCCTGCCATCTTTTTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGcc                                                                                            <  2:57473/140‑1 (MQ=255)
                                          gTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGcc                                                                                            <  2:258135/140‑1 (MQ=255)
                                                 cAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCt                                                                                     <  2:1131549/140‑1 (MQ=255)
                                                 cAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCt                                                                                     >  1:387593/1‑140 (MQ=255)
                                                  aGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTg                                                                                    >  2:598102/1‑140 (MQ=255)
                                                    tCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTa                                                                                  <  1:806831/140‑1 (MQ=255)
                                                    tCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTa                                                                                  <  2:387593/140‑1 (MQ=255)
                                                     ccTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAg                                                                                 >  1:819917/1‑140 (MQ=255)
                                                      cTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGc                                                                                <  1:381852/140‑1 (MQ=255)
                                                            tCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGatcat                                                                          <  2:885691/140‑1 (MQ=255)
                                                                aTTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCt                                                                      <  1:341449/140‑1 (MQ=255)
                                                                   tctcACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTg                                                                   >  2:655638/1‑140 (MQ=255)
                                                                     tcACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGAt                                                                 <  2:912903/140‑1 (MQ=255)
                                                                      cACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATc                                                                >  2:282593/1‑140 (MQ=255)
                                                                       aCTATCGACCAGGCCGCGCACGAAGGCACTCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATcc                                                               >  1:625620/1‑140 (MQ=255)
                                                                       aCTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGAt                                                                 <  1:314385/138‑1 (MQ=255)
                                                                       aCTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGAt                                                                 >  2:314385/1‑138 (MQ=255)
                                                                       aCTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATcc                                                               >  1:38123/1‑140 (MQ=255)
                                                                        cTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATccc                                                              <  1:598102/140‑1 (MQ=255)
                                                                           tCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGc                                                           <  2:360636/140‑1 (MQ=255)
                                                                            cGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGcc                                                          <  1:988483/140‑1 (MQ=255)
                                                                             gACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCTTTTGATCCCTGCCa                                                         <  1:694921/140‑1 (MQ=255)
                                                                             gACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCa                                                         <  2:896572/140‑1 (MQ=255)
                                                                             gACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCa                                                         <  2:125966/140‑1 (MQ=255)
                                                                             gACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCa                                                         >  2:60028/1‑140 (MQ=255)
                                                                              aCCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCAc                                                        >  1:1074627/1‑140 (MQ=255)
                                                                                   gCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACggtgg                                                   >  1:637850/1‑140 (MQ=255)
                                                                                   gCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACggtg                                                    >  2:969801/1‑139 (MQ=255)
                                                                                   gCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACggtg                                                    <  1:969801/139‑1 (MQ=255)
                                                                                       cgcACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGcc                                               >  2:314206/1‑140 (MQ=255)
                                                                                              aGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATcc                                        >  2:784165/1‑140 (MQ=255)
                                                                                                gCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCcac                                      <  1:509134/140‑1 (MQ=255)
                                                                                                     cTGCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCgg                                 <  2:1074627/140‑1 (MQ=255)
                                                                                                       gCATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGta                               <  2:284265/140‑1 (MQ=255)
                                                                                                        cATCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTAATCCCTGCCACGGTGGTGCCGAGATCCACATCGGtaa                              <  1:1075571/140‑1 (MQ=255)
                                                                                                          tCACTAAAACAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGtaata                            >  2:898909/1‑140 (MQ=255)
                                                                                                                aaaCAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATcaac                      >  2:504443/1‑140 (MQ=255)
                                                                                                                  aCAATCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACAGTGGTGCCGAGATCCACATCGGTAATAATcaacaa                    <  1:282593/140‑1 (MQ=255)
                                                                                                                     aTCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACgg                 >  1:268136/1‑140 (MQ=255)
                                                                                                                      tCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGc                >  1:953295/1‑140 (MQ=255)
                                                                                                                      tCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGc                <  2:38123/140‑1 (MQ=255)
                                                                                                                      tCACCACCGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGc                >  1:595492/1‑140 (MQ=255)
                                                                                                                        accaccGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCca              <  1:898909/140‑1 (MQ=255)
                                                                                                                          ccccGGTGGGATAAGTGTTAACAACATCGCCTCCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGCTCCCTGCCACGGTGGTGCCGAGATCCTCATCGGTAATAATCAACAACGGCcaca            <  2:241936/138‑1 (MQ=255)
                                                                                                                           accGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACaa           <  2:637850/140‑1 (MQ=255)
                                                                                                                            ccGGAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACaaa          >  1:505681/1‑140 (MQ=255)
                                                                                                                              ggAGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACAAATa        <  1:930746/140‑1 (MQ=255)
                                                                                                                                aGGGATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACAAATACt      >  1:76889/1‑140 (MQ=255)
                                                                                                                                   gATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACAAATACTGAt   <  1:655638/140‑1 (MQ=255)
                                                                                                                                   gATAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACAAATACTGAt   <  1:504443/140‑1 (MQ=255)
                                                                                                                                    aTAAGTGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACAAATACTGAtt  >  1:941056/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGCACGAAGGCACGCTGCATCACTAAAACAATCACCACCGGAGGGATAAGCGTTAACAACATCGCCACCATCACTGAGTTCCATTCCGTGGTGCCTTCGCCTGTAGCGATCATCCCTTTGATCCCTGCCACGGTGGTGCCGAGATCCACATCGGTAATAATCAACAACGGCCACAAATACTGATT  >  NC_000913/3589120‑3589391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A