Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,590,501 G→A I137I (ATC→ATT)  ugpA ← sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,590,5010GA100.0% 207.1 / NA 60I137I (ATC→ATT) ugpAsn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (28/32);  total (28/32)

GATTGCAGCGCGGCATAGAAGAACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTGATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACGATGTACTCCACCAGCGCCGCAAA  >  NC_000913/3590364‑3590635
                                                                                                                                         |                                                                                                                                      
gATTGCAGCGCGGCATAGAAGAACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAAt                                                                                                                                      <  1:834324/140‑1 (MQ=255)
          cgGCATAGAAGAACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGa                                                                                                                            >  1:505335/1‑140 (MQ=255)
          cgGCATAGAAGAACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGa                                                                                                                            >  1:743612/1‑140 (MQ=255)
          cgGCATAGAAGAACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGa                                                                                                                            >  2:598136/1‑140 (MQ=255)
           ggCATAGAAGAACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGAc                                                                                                                           <  2:566903/140‑1 (MQ=255)
                agaagaACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCgggg                                                                                                                      <  1:720829/140‑1 (MQ=255)
                agaagaACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCgggg                                                                                                                      <  2:505335/140‑1 (MQ=255)
                       cAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACa                                                                                                               >  2:897752/1‑140 (MQ=255)
                       cAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACa                                                                                                               >  2:654153/1‑140 (MQ=255)
                       cAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACa                                                                                                               >  1:91995/1‑140 (MQ=255)
                         ggAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAgg                                                                                                             <  1:568211/140‑1 (MQ=255)
                         ggAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAgg                                                                                                             >  2:790545/1‑140 (MQ=255)
                          gAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCCGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGa                                                                                                            <  2:1048972/140‑1 (MQ=255)
                          gAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGa                                                                                                            >  2:871067/1‑140 (MQ=255)
                          gAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGa                                                                                                            >  1:117653/1‑140 (MQ=255)
                            aGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAg                                                                                                          <  1:745697/140‑1 (MQ=255)
                               tGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATc                                                                                                       >  2:24842/1‑140 (MQ=255)
                               tGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATc                                                                                                       <  1:177573/140‑1 (MQ=255)
                                         ttGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATAcgg                                                                                             <  1:797238/140‑1 (MQ=255)
                                                  tACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTGCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAAcgg                                                                                    >  2:1090337/1‑140 (MQ=255)
                                                     tGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAAcggcgg                                                                                 <  1:654153/140‑1 (MQ=255)
                                                      gAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCggg                                                                                >  2:742776/1‑140 (MQ=255)
                                                       aGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCTGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCgggg                                                                               >  2:298666/1‑139 (MQ=255)
                                                       aGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCC‑GTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAg                                                                              >  1:1108392/1‑140 (MQ=255)
                                                         gCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCgggggg                                                                             >  2:1114846/1‑137 (MQ=255)
                                                         gCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGc                                                                             <  2:546329/140‑1 (MQ=255)
                                                           aaaCACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCa                                                                           <  1:871067/140‑1 (MQ=255)
                                                           aaaCACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCa                                                                           <  1:598136/140‑1 (MQ=255)
                                                           aaaCACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCa                                                                           <  1:59427/140‑1 (MQ=255)
                                                            aaCACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAAcggcgg                                                                                 >  2:336518/1‑133 (MQ=255)
                                                            aaCACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAAcggcgg                                                                                 <  1:336518/133‑1 (MQ=255)
                                                            aaCACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCAc                                                                          >  2:391197/1‑140 (MQ=255)
                                                                   ccaGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGGGCCACCGCGGaa                                                                   >  2:444787/1‑140 (MQ=255)
                                                                   ccaGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTaa                                                                   >  1:628594/1‑140 (MQ=255)
                                                                        aaCATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGgcag                                                              <  1:1102143/140‑1 (MQ=255)
                                                                        aaCATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGgcag                                                              <  1:24842/140‑1 (MQ=255)
                                                                           aTTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCaa                                                           >  1:707561/1‑140 (MQ=255)
                                                                              gCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGGGGCACCGCGGAAAGCAGCcacaa                                                        >  1:252348/1‑139 (MQ=255)
                                                                              gCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACAt                                                        <  2:1103242/140‑1 (MQ=255)
                                                                                  gACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGGGCGCCAGCGGAAAGCAGCCACATTAAg                                                    >  2:190696/1‑140 (MQ=255)
                                                                                   aCCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAgg                                                   <  1:790545/140‑1 (MQ=255)
                                                                                         gTTTTGCGCGTGGTTCC‑GTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATa                                            <  2:1108392/140‑1 (MQ=255)
                                                                                                    ggTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGGGCCCCGGCGGAAGGCAGCAACATTTAAGGTTGATAGaaaaagccg                                  >  2:428109/1‑134 (MQ=255)
                                                                                                    ggTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTg                                  <  1:686353/140‑1 (MQ=255)
                                                                                                    ggTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTg                                  <  2:707561/140‑1 (MQ=255)
                                                                                                      ttCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGcc                                <  1:190696/140‑1 (MQ=255)
                                                                                                        ccAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCcgc                              <  2:743612/140‑1 (MQ=255)
                                                                                                         cAGTCGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCcgcg                             <  2:628594/140‑1 (MQ=255)
                                                                                                             cGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCTGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACg                         <  1:298666/140‑1 (MQ=255)
                                                                                                             cGTAGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACg                         <  2:117653/140‑1 (MQ=255)
                                                                                                                aGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACGATg                      <  1:391197/140‑1 (MQ=255)
                                                                                                                aGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACCGCGTAAGGGAGCCAAATTAAGGTTTGATAGAAAAGGCTGCCGCGCACGCTg                      >  1:556289/1‑140 (MQ=255)
                                                                                                                aGCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAAACACTGGCTTAGACAGCAACAACAAGGCTTTATAAAAAAGGGGGGCGCGCaacgat                      >  2:611021/1‑135 (MQ=255)
                                                                                                                 gCCGAACTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGGGGCCCCGCGGAAGGGAGCAACATTAAGGGTTGATAGAAAAGGCCGCCGCGCACGaagg                     >  2:63637/1‑137 (MQ=255)
                                                                                                                      aCTCCGCGAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGGGCCACCGCGGGAGGCAGCAACATTAAAGGTTGGTAGAAACGGCTGCCGCGCACGCGGGACTcc                >  2:340124/1‑140 (MQ=255)
                                                                                                                          cgcgAGAAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGGCACGGCGGAAAGGAGCAAAATTAAAGGTTGATAGAAAAGGCCGCCGCGCACGATGTACTcccccc            >  2:446875/1‑139 (MQ=255)
                                                                                                                             gagaAAATGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACGATGTACTCCACCAgcg         <  2:91995/140‑1 (MQ=255)
                                                                                                                                 aaaTGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACGATGTACTCCACCAGcgccgc     <  1:444787/140‑1 (MQ=255)
                                                                                                                                  aaTGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACGATGTACTCCACCAGCGCCGCa    <  1:63637/140‑1 (MQ=255)
                                                                                                                                    tGGGTAATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACGATGTACTCCACCAGCGCCGCaaa  <  1:428109/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
GATTGCAGCGCGGCATAGAAGAACAGGAAGTTGTAGCTGATTTGCTTCCATACTGAGGCAAACACCACCAGAAACATTGCCTGACCGCTGTTTTGCGCGTGGTTCCAGTCGTAGCCGAACTCCGCGAGAAAATGGGTGATCAGCCCGCGACCGGGGTTAAACAGGAAGATCCACAATACGGCGGCAACGGCGGGAGCCACGGCGTAAGGCAGCAACATTAAGGTTTGATAGAAACGGCTGCCGCGCACGATGTACTCCACCAGCGCCGCAAA  >  NC_000913/3590364‑3590635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A