Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,657,779	A→G	intergenic (+212/+207)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,657,779	0	A	G	100.0%	331.8 / NA	92	intergenic (+212/+207)	hdeD/arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (46/46); total (46/46)

GTTGTAGATCAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTAGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATAAATATCCG  >  NC_000913/3657643‑3657915

gttgtAGATCAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTc                                                                                                                                       <  1:515883/140‑1 (MQ=255)

      gATCAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCGTGGCTGATATTTTCCGTGGTCAGGttt                                                                                                                                 >  2:821602/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGt                                                                                                                                        <  2:266780/130‑1 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGt                                                                                                                                        >  1:266780/1‑130 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  2:1092369/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  2:285135/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  2:1039266/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  1:656478/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  2:538296/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  1:1047497/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  1:830063/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  2:981573/1‑140 (MQ=255)

         cAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAAt                                                                                                                              >  2:152126/1‑140 (MQ=255)

           aTTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGt                                                                                                                            >  2:464248/1‑140 (MQ=255)

           aTTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGt                                                                                                                            >  2:280239/1‑140 (MQ=255)

           aTTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGt                                                                                                                            >  2:45491/1‑140 (MQ=255)

           aTTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGt                                                                                                                            >  1:431421/1‑140 (MQ=255)

           aTTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGt                                                                                                                            >  1:1070739/1‑140 (MQ=255)

           aTTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGt                                                                                                                            >  1:421577/1‑140 (MQ=255)

           aTTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGt                                                                                                                            >  2:430908/1‑140 (MQ=255)

                 cACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTaaa                                                                                                                      >  1:154659/1‑140 (MQ=255)

                 cACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTaaa                                                                                                                      >  1:144529/1‑140 (MQ=255)

                  aCTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCGTGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTaaaa                                                                                                                     <  1:821602/140‑1 (MQ=255)

                  aCTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTaaaa                                                                                                                     <  1:678259/140‑1 (MQ=255)

                  aCTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTaaaa                                                                                                                     <  2:154659/140‑1 (MQ=255)

                      tCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGc                                                                                                                 >  1:332106/1‑140 (MQ=255)

                              ataatTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGaa                                                                                                         <  2:332106/140‑1 (MQ=255)

                               taatTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGaaa                                                                                                        <  1:937492/140‑1 (MQ=255)

                                aatTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAg                                                                                                       >  1:394095/1‑140 (MQ=255)

                                aatTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAg                                                                                                       >  1:588930/1‑140 (MQ=255)

                                   tACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGa                                                                                                    <  1:981573/140‑1 (MQ=255)

                                    aCCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGaa                                                                                                   >  1:163651/1‑140 (MQ=255)

                                         cTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAag                                                                                              <  1:464248/140‑1 (MQ=255)

                                         cTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAag                                                                                              >  1:727539/1‑140 (MQ=255)

                                         cTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAag                                                                                              <  2:144529/140‑1 (MQ=255)

                                           aGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAagag                                                                                            <  2:1015476/140‑1 (MQ=255)

                                           aGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAagag                                                                                            >  2:1014486/1‑140 (MQ=255)

                                                 tattTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGt                                                                                      <  2:126349/140‑1 (MQ=255)

                                                  attTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTa                                                                                     <  2:830063/140‑1 (MQ=255)

                                                   tttCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTaa                                                                                    >  1:130553/1‑140 (MQ=255)

                                                    ttCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAg                                                                                   <  1:280239/140‑1 (MQ=255)

                                                        aCCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGtt                                                                               <  2:727539/140‑1 (MQ=255)

                                                         ccTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAg                                                                                   >  1:582573/1‑135 (MQ=255)

                                                         ccTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAg                                                                                   <  2:582573/135‑1 (MQ=255)

                                                           tACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGAt                                                                            >  2:587527/1‑140 (MQ=255)

                                                              tGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCt                                                                         <  2:656478/140‑1 (MQ=255)

                                                              tGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCt                                                                         <  1:738886/140‑1 (MQ=255)

                                                                  tttCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATgg                                                                     <  2:1047497/140‑1 (MQ=255)

                                                                  tttCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATgg                                                                     <  2:190828/140‑1 (MQ=255)

                                                                    tCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGc                                                                   <  1:587527/140‑1 (MQ=255)

                                                                    tCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGc                                                                   <  2:163651/140‑1 (MQ=255)

                                                                     cATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCg                                                                  >  2:993051/1‑140 (MQ=255)

                                                                     cATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCg                                                                  <  2:394095/140‑1 (MQ=255)

                                                                     cATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCg                                                                  >  1:481736/1‑140 (MQ=255)

                                                                            tttttttCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAAt                                                           >  2:243226/1‑140 (MQ=255)

                                                                                     ctctATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATcc                                                  >  2:693096/1‑140 (MQ=255)

                                                                                               aaTTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCAttt                                        >  2:645050/1‑140 (MQ=255)

                                                                                                aTTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCa                                           >  2:169464/1‑136 (MQ=255)

                                                                                                aTTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCa                                           <  1:169464/136‑1 (MQ=255)

                                                                                                aTTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCAtttt                                       >  2:564522/1‑140 (MQ=255)

                                                                                                  tAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCAtttttt                                     >  2:569528/1‑140 (MQ=255)

                                                                                                  tAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCAtttttt                                     >  2:426881/1‑140 (MQ=255)

                                                                                                  tAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCAtttttt                                     >  2:560569/1‑140 (MQ=255)

                                                                                                      cATTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCa                                 >  2:660849/1‑140 (MQ=255)

                                                                                                       aTTTCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCaa                                <  1:45491/140‑1 (MQ=255)

                                                                                                          tCAAACATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTg                             <  1:1092369/140‑1 (MQ=255)

                                                                                                            aaaCATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGc                           <  2:588930/140‑1 (MQ=255)

                                                                                                            aaaCATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGc                           <  1:560569/140‑1 (MQ=255)

                                                                                                            aaaCATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGc                           <  1:426881/140‑1 (MQ=255)

                                                                                                            aaaCATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGc                           <  1:243226/140‑1 (MQ=255)

                                                                                                              aCATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGt                         >  1:602445/1‑140 (MQ=255)

                                                                                                              aCATTATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGt                         <  2:421577/140‑1 (MQ=255)

                                                                                                                 ttATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGa                      <  1:152126/140‑1 (MQ=255)

                                                                                                                  tATCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGAt                     <  1:538296/140‑1 (MQ=255)

                                                                                                                   aTCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGAtt                    >  2:651025/1‑140 (MQ=255)

                                                                                                                   aTCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGAtt                    >  1:648820/1‑140 (MQ=255)

                                                                                                                    tCATGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGACTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTa                   <  2:699865/140‑1 (MQ=255)

                                                                                                                      aTGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACa                 <  2:602445/140‑1 (MQ=255)

                                                                                                                      aTGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACa                 <  1:1039266/140‑1 (MQ=255)

                                                                                                                      aTGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACa                 <  2:481736/140‑1 (MQ=255)

                                                                                                                      aTGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACa                 <  2:130553/140‑1 (MQ=255)

                                                                                                                      aTGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACa                 <  1:693096/140‑1 (MQ=255)

                                                                                                                      aTGGCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACa                 <  1:564522/140‑1 (MQ=255)

                                                                                                                         gCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTg              >  1:111093/1‑140 (MQ=255)

                                                                                                                         gCTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTg              <  1:1014486/140‑1 (MQ=255)

                                                                                                                          cTGATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGc             >  1:282651/1‑140 (MQ=255)

                                                                                                                            gATATTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCAt           <  1:660849/140‑1 (MQ=255)

                                                                                                                             atatTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATa          >  2:254363/1‑140 (MQ=255)

                                                                                                                             atatTTTCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATa          >  1:227147/1‑140 (MQ=255)

                                                                                                                                 tttCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATAAata      <  2:431421/140‑1 (MQ=255)

                                                                                                                                 tttCCGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATAAata      <  2:998229/140‑1 (MQ=255)

                                                                                                                                    ccGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATAAATATcc   <  1:651025/140‑1 (MQ=255)

                                                                                                                                     cGTGGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAAATGGCGTTGATTACATTGCATAAATATCCg  <  1:645050/140‑1 (MQ=255)

GTTGTAGATCAATTGCGCACTATCATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAGCCATTTCAAACATTATCATGGCTGATATTTTCCGTAGTCAGGTTTAATGTTTTAAAAGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATAAATATCCG  >  NC_000913/3657643‑3657915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A