Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,700,280 A→G intergenic (+81/‑283) rdlD → / → yhjV antisense regulatory RNA RdlD/putative transporter YhjV

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,700,2800AG100.0% 258.8 / NA 73intergenic (+81/‑283)rdlD/yhjVantisense regulatory RNA RdlD/putative transporter YhjV
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (42/31);  total (42/31)

TCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAA  >  NC_000913/3700144‑3700413
                                                                                                                                        |                                                                                                                                     
tCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTc                                                                                                                                    >  2:1100549/1‑140 (MQ=255)
  aaGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTa                                                                                                                                  >  1:888168/1‑140 (MQ=255)
  aaGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTa                                                                                                                                  >  2:1088664/1‑140 (MQ=255)
  aaGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTa                                                                                                                                  >  1:205171/1‑140 (MQ=255)
   aGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTAc                                                                                                                                 >  2:1078350/1‑140 (MQ=255)
       tAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGAtt                                                                                                                             <  1:1078350/140‑1 (MQ=255)
       tAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGAtt                                                                                                                             <  2:1127958/140‑1 (MQ=255)
               gtggtgTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTa                                                                                                                     >  1:1116901/1‑140 (MQ=255)
                    gttgtCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTc                                                                                                                >  2:107159/1‑140 (MQ=255)
                    gttgtCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTc                                                                                                                >  2:848326/1‑140 (MQ=255)
                       gtCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGc                                                                                                             <  2:760267/140‑1 (MQ=255)
                       gtCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGc                                                                                                             >  1:345304/1‑140 (MQ=255)
                       gtCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGc                                                                                                             >  2:905815/1‑140 (MQ=255)
                       gtCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGc                                                                                                             >  2:1116020/1‑140 (MQ=255)
                          aGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCAcc                                                                                                          <  2:629619/140‑1 (MQ=255)
                           ggTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCAccc                                                                                                         <  2:1116901/140‑1 (MQ=255)
                            gTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCg                                                                                                        >  1:413761/1‑140 (MQ=255)
                            gTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCg                                                                                                        >  1:676329/1‑140 (MQ=255)
                             tGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCgg                                                                                                       <  1:1100549/140‑1 (MQ=255)
                               cATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCa                                                                                                     <  1:905815/140‑1 (MQ=255)
                               cATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCa                                                                                                     <  1:848326/140‑1 (MQ=255)
                                  aCCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAAt                                                                                                   >  2:751635/1‑139 (MQ=255)
                                  aCCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAAt                                                                                                   <  1:751635/139‑1 (MQ=255)
                                  aCCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATc                                                                                                  >  1:321552/1‑140 (MQ=255)
                                       cAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCt                                                                                             >  2:768067/1‑140 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCgg                                                                                                       <  2:1015394/125‑1 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCgg                                                                                                       >  1:1015394/1‑125 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTg                                                                                        >  2:170586/1‑140 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTg                                                                                        >  2:330659/1‑140 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTg                                                                                        >  2:450139/1‑140 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTg                                                                                        >  2:914076/1‑140 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTg                                                                                        >  1:352221/1‑140 (MQ=255)
                                            tGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTg                                                                                        >  1:384208/1‑140 (MQ=255)
                                              cGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTTACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTgcg                                                                                      >  2:408779/1‑140 (MQ=255)
                                              cGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCTGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCgg                                                                                                       >  1:850745/1‑123 (MQ=255)
                                              cGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCgg                                                                                                       <  2:850745/123‑1 (MQ=255)
                                              cGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTgcg                                                                                      <  1:1116020/140‑1 (MQ=255)
                                                   gTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATg                                                                                 <  1:390863/140‑1 (MQ=255)
                                                      ttCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCa                                                                                           >  1:1114973/1‑127 (MQ=255)
                                                      ttCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCa                                                                                           <  2:1114973/127‑1 (MQ=255)
                                                             tcCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCt                                                                       <  2:413761/140‑1 (MQ=255)
                                                               cAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTa                                                                     <  2:132005/140‑1 (MQ=255)
                                                                       aaTGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCCCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCttt                                                             >  1:47174/1‑140 (MQ=255)
                                                                        aTGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTa                                                            <  2:321552/140‑1 (MQ=255)
                                                                           ccaccaGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTAttt                                                         <  1:446313/140‑1 (MQ=255)
                                                                               caGGGATAAAGCCCCCGCAACATTGCGCCTCACCAGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCaa                                                     >  1:857717/1‑140 (MQ=255)
                                                                                     tAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTg                                               >  1:1065327/1‑140 (MQ=255)
                                                                                            cccGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGTTTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCa                                        >  2:253900/1‑140 (MQ=255)
                                                                                            cccGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCa                                        >  2:455776/1‑140 (MQ=255)
                                                                                                 aaCATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATcc                                   <  2:551853/140‑1 (MQ=255)
                                                                                                    aTTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCggg                                <  2:1065327/140‑1 (MQ=255)
                                                                                                     ttGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGc                               >  2:545014/1‑140 (MQ=255)
                                                                                                      tGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCt                              <  1:107159/140‑1 (MQ=255)
                                                                                                       gcgcCTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTg                             <  1:1088664/140‑1 (MQ=255)
                                                                                                           cTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTc                         >  1:175541/1‑140 (MQ=255)
                                                                                                           cTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTc                         >  1:806920/1‑140 (MQ=255)
                                                                                                           cTCACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTc                         <  1:629464/140‑1 (MQ=255)
                                                                                                             cACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCa                       >  1:696412/1‑140 (MQ=255)
                                                                                                             cACCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCa                       >  2:322863/1‑140 (MQ=255)
                                                                                                              aCCGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAg                      <  2:352221/140‑1 (MQ=255)
                                                                                                                cGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGAc                    <  1:914076/140‑1 (MQ=255)
                                                                                                                cGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGAc                    <  1:330659/140‑1 (MQ=255)
                                                                                                                cGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGAc                    <  2:826596/140‑1 (MQ=255)
                                                                                                                cGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGAc                    <  2:175541/140‑1 (MQ=255)
                                                                                                                cGGAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAAGCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGAc                    <  2:676329/140‑1 (MQ=255)
                                                                                                                  gAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCggg                                >  1:804566/1‑126 (MQ=255)
                                                                                                                  gAACCTTTCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCggg                                <  2:804566/126‑1 (MQ=255)
                                                                                                                         tCCGGCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGa           >  2:827716/1‑140 (MQ=255)
                                                                                                                             gCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATg       <  1:768067/140‑1 (MQ=255)
                                                                                                                             gCTTGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATg       >  2:403759/1‑140 (MQ=255)
                                                                                                                               ttGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATgcg     >  2:852087/1‑140 (MQ=255)
                                                                                                                                tGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATgcgc    >  2:251354/1‑140 (MQ=255)
                                                                                                                                tGCCGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATgcgc    >  2:301309/1‑140 (MQ=255)
                                                                                                                                  ccGCTGGTTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCaa  <  1:827716/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
TCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAATTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAA  >  NC_000913/3700144‑3700413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A