Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,796,188 (C)5→6 coding (210/960 nt) waaC → ADP‑heptose:LPS heptosyltransferase 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,796,1831.C100.0% 232.8 / NA 66A69P (GCC→CCC) waaCADP‑heptose:LPS heptosyltransferase 1
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (31/35);  total (31/35)

ATGCCCAGCAGGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑CCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGC  >  NC_000913/3796046‑3796312
                                                                                                                                          |                                                                                                                                 
aTGCCCAGCAGGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCgg                                                                                                                                    <  2:286250/138‑1 (MQ=255)
aTGCCCAGCAGGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCgg                                                                                                                                    >  1:286250/1‑138 (MQ=255)
aTGCCCAGCAGGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑cc                                                                                                                                 <  1:598478/140‑1 (MQ=255)
   cccAGCAGGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑ccccc                                                                                                                              <  2:152978/140‑1 (MQ=255)
      agcagGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑ccccccat                                                                                                                           >  1:1104537/1‑137 (MQ=255)
      agcagGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑ccccccat                                                                                                                           >  2:931796/1‑137 (MQ=255)
        cagGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑ccccccataa                                                                                                                         >  1:50362/1‑135 (MQ=255)
        cagGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑ccccccataa                                                                                                                         >  1:433491/1‑135 (MQ=255)
          ggCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATaaaa                                                                                                                        >  2:54786/1‑140 (MQ=255)
           gCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAg                                                                                                                       >  1:173965/1‑140 (MQ=255)
                cccAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGaa                                                                                                                  >  2:517795/1‑140 (MQ=255)
                      gATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGCAACGCaaa                                                                                                            >  2:486622/1‑140 (MQ=255)
                      gATTAAGTTTGACTGGGTGGTCGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCaaa                                                                                                            <  2:890746/140‑1 (MQ=255)
                         tAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCg                                                                                                         >  2:914475/1‑140 (MQ=255)
                          aaGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGt                                                                                                        >  2:985524/1‑140 (MQ=255)
                           aGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGtt                                                                                                       <  1:469036/140‑1 (MQ=255)
                           aGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCATTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGtt                                                                                                       >  2:217466/1‑140 (MQ=255)
                               tGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGt                                                                                                   <  2:433491/140‑1 (MQ=255)
                                gACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTg                                                                                                  <  1:205719/140‑1 (MQ=255)
                                gACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTg                                                                                                  >  2:1094061/1‑140 (MQ=255)
                                 aCTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGa                                                                                                 >  1:1056379/1‑140 (MQ=255)
                                 aCTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGa                                                                                                 <  2:1104537/140‑1 (MQ=255)
                                  cTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGaa                                                                                                <  1:217466/140‑1 (MQ=255)
                                    gggTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAgc                                                                                              <  2:942657/140‑1 (MQ=255)
                                       tggtggAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCt                                                                                           <  2:265304/140‑1 (MQ=255)
                                         gtggAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTAc                                                                                         <  2:1056379/140‑1 (MQ=255)
                                           ggAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGaa                                                                                                >  2:185181/1‑131 (MQ=255)
                                           ggAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGaa                                                                                                <  1:185181/131‑1 (MQ=255)
                                           ggAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACaa                                                                                       <  1:517795/140‑1 (MQ=255)
                                            gaagaaGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAg                                                                                      <  2:104515/140‑1 (MQ=255)
                                              agaagGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCa                                                                                    <  1:347682/140‑1 (MQ=255)
                                               gaagGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCt                                                                                           <  2:862478/132‑1 (MQ=255)
                                               gaagGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCt                                                                                           >  1:862478/1‑132 (MQ=255)
                                                aagGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCaga                                                                                  >  2:139869/1‑140 (MQ=255)
                                                   ggTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGaa                                                                               >  2:1068867/1‑140 (MQ=255)
                                                       cGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTAt                                                                           >  1:63977/1‑140 (MQ=255)
                                                       cGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTAt                                                                           <  2:173965/140‑1 (MQ=255)
                                                          acaGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGAc                                                                        <  1:414549/140‑1 (MQ=255)
                                                            aGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGc                                                                      >  2:263957/1‑140 (MQ=255)
                                                              aTTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAg                                                                    >  1:148244/1‑140 (MQ=255)
                                                              aTTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAg                                                                    >  2:903852/1‑140 (MQ=255)
                                                                    tcctGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCg                                                              <  1:1094061/140‑1 (MQ=255)
                                                                    tcctGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCg                                                              <  2:679427/140‑1 (MQ=255)
                                                                    tcctGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCg                                                              >  2:197659/1‑140 (MQ=255)
                                                                     cctGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGa                                                             <  1:931796/140‑1 (MQ=255)
                                                                     cctGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGa                                                             <  1:1032518/140‑1 (MQ=255)
                                                                        ggCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGAc                                                                        <  1:856278/126‑1 (MQ=255)
                                                                        ggCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGAc                                                                        >  2:856278/1‑126 (MQ=255)
                                                                            cGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAg                                                      >  2:300812/1‑140 (MQ=255)
                                                                              cTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAggg                                                    >  2:328127/1‑140 (MQ=255)
                                                                               tGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAgggg                                                   <  2:861698/140‑1 (MQ=255)
                                                                                       aGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTaaa                                           >  2:1088466/1‑140 (MQ=255)
                                                                                       aGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTaaa                                           >  2:333020/1‑140 (MQ=255)
                                                                                         cGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTaaaaa                                         >  1:979997/1‑140 (MQ=255)
                                                                                           aGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAgc                                       >  1:600980/1‑140 (MQ=255)
                                                                                            gTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAgcg                                      <  2:63977/140‑1 (MQ=255)
                                                                                            gTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTCGTAAAAAgcg                                      <  1:616100/140‑1 (MQ=255)
                                                                                                 tCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCgcggcg                                 >  2:888828/1‑140 (MQ=255)
                                                                                                 tCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCgcggcg                                 >  1:598935/1‑140 (MQ=255)
                                                                                                      tgGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGt                            <  2:598935/140‑1 (MQ=255)
                                                                                                      tgGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGt                            >  2:988931/1‑140 (MQ=255)
                                                                                                          aaTACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGAcg                        >  1:78384/1‑140 (MQ=255)
                                                                                                             aCGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGt                     <  1:328127/140‑1 (MQ=255)
                                                                                                                tCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTg                  <  2:979997/140‑1 (MQ=255)
                                                                                                                    tGGCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGgcgc              <  1:988931/140‑1 (MQ=255)
                                                                                                                     ggCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTTACGCGTCTGGCGCa             <  1:333020/140‑1 (MQ=255)
                                                                                                                     ggCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCa             <  2:50362/140‑1 (MQ=255)
                                                                                                                     ggCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCa             <  1:653540/140‑1 (MQ=255)
                                                                                                                     ggCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCa             <  1:263957/140‑1 (MQ=255)
                                                                                                                     ggCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCa             <  1:903852/140‑1 (MQ=255)
                                                                                                                     ggCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCa             <  1:914475/140‑1 (MQ=255)
                                                                                                                      gCGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCAt            >  2:1094427/1‑140 (MQ=255)
                                                                                                                       cGTAAAGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATg           >  1:251791/1‑140 (MQ=255)
                                                                                                                            aGCCTGGTTCTCGGCCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTa      <  1:1088466/140‑1 (MQ=255)
                                                                                                                                tGGTTCTCGGCCCCCCATAAAAGCGGAACGAAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCCGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAgc  <  2:697825/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                 
ATGCCCAGCAGGCAATCCCAGGGATTAAGTTTGACTGGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGG‑CCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGC  >  NC_000913/3796046‑3796312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A