Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,065,094	T→C	I225V (ATT→GTT)	yihO ←	putative sulfoquinovose transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,065,094	0	T	C	100.0%	297.9 / NA	84	I225V (ATT→GTT)	yihO	putative sulfoquinovose transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/44); total (40/44)

ATTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGT  >  NC_000913/4064963‑4065217

aTTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCtt                                                                                                                     >  2:988646/1‑140 (MQ=255)

aTTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCtt                                                                                                                     >  2:267582/1‑140 (MQ=255)

 ttCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCttt                                                                                                                    >  1:949661/1‑140 (MQ=255)

 ttCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCttt                                                                                                                    >  1:247093/1‑140 (MQ=255)

  tCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTa                                                                                                                   >  2:585970/1‑140 (MQ=255)

      cacaTACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTc                                                                                                               >  1:1019387/1‑140 (MQ=255)

       acaTACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTcc                                                                                                              <  1:815949/140‑1 (MQ=255)

         aTACTGGGTGTAATAGACCTGAATCGTCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCgg                                                                                                            >  1:903904/1‑140 (MQ=255)

          tACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGt                                                                                                           <  2:844065/140‑1 (MQ=255)

           aCTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTa                                                                                                                   <  1:445805/131‑1 (MQ=255)

           aCTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTa                                                                                                                   >  2:445805/1‑131 (MQ=255)

           aCTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGtt                                                                                                          >  2:681694/1‑140 (MQ=255)

           aCTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGtt                                                                                                          >  1:73839/1‑140 (MQ=255)

           aCTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGtt                                                                                                          >  2:286119/1‑140 (MQ=255)

           aCTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGtt                                                                                                          >  2:323690/1‑140 (MQ=255)

           aCTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGtt                                                                                                          >  2:4888/1‑140 (MQ=255)

              tggTGAAATAGACCTGAATCGCCGGATTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGc                                                                                                       >  2:1066557/2‑140 (MQ=255)

              gggTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGc                                                                                                       >  1:1039281/1‑140 (MQ=255)

               ggTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCg                                                                                                      <  2:353024/140‑1 (MQ=255)

                gtgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTcc                                                                                                              >  2:282931/1‑131 (MQ=255)

                gtgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTcc                                                                                                              <  1:282931/131‑1 (MQ=255)

                gtgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGt                                                                                                     <  2:376998/140‑1 (MQ=255)

                gtgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGt                                                                                                     <  2:247093/140‑1 (MQ=255)

                 tgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACGCTGGCTTTATGTCCGGTTGGCGtt                                                                                                    <  2:111141/140‑1 (MQ=255)

                 tgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGtt                                                                                                    >  1:611213/1‑140 (MQ=255)

                 tgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGtt                                                                                                    <  2:122865/140‑1 (MQ=255)

                 tgtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGtt                                                                                                    <  2:949661/140‑1 (MQ=255)

                  gtAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTtg                                                                                                   <  2:73839/140‑1 (MQ=255)

                   tAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTg                                                                                                         <  2:300381/133‑1 (MQ=255)

                   tAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTg                                                                                                         >  1:300381/1‑133 (MQ=255)

                   tAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTtgt                                                                                                  >  1:31543/1‑140 (MQ=255)

                     aTAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCg                                                                                                      <  1:1011325/134‑1 (MQ=255)

                     aTAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCg                                                                                                      >  2:858500/1‑134 (MQ=255)

                     aTAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCg                                                                                                      >  2:1011325/1‑134 (MQ=255)

                     aTAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCg                                                                                                      <  1:858500/134‑1 (MQ=255)

                     aTAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTgtgt                                                                                                >  1:1063470/1‑140 (MQ=255)

                     aTAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTgtgt                                                                                                >  2:203759/1‑140 (MQ=255)

                     aTAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTgtgt                                                                                                >  2:144061/1‑140 (MQ=255)

                       aGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTcc                                                                                              <  2:147817/140‑1 (MQ=255)

                       aGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTcc                                                                                              <  2:107266/140‑1 (MQ=255)

                         aCCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCg                                                                                                      <  1:86593/130‑1 (MQ=255)

                         aCCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCg                                                                                                      >  2:86593/1‑130 (MQ=255)

                         aCCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCcac                                                                                            >  2:200436/1‑140 (MQ=255)

                           cTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTg                                                                                                         >  2:242521/1‑125 (MQ=255)

                           cTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTg                                                                                                         <  1:242521/125‑1 (MQ=255)

                           cTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGtt                                                                                                    <  2:909868/130‑1 (MQ=255)

                           cTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGtt                                                                                                    >  1:909868/1‑130 (MQ=255)

                            tGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATa                                                                                         <  1:545856/140‑1 (MQ=255)

                              aaTCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAAt                                                                                       >  1:327140/1‑140 (MQ=255)

                              aaTCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAAt                                                                                       >  1:476578/1‑140 (MQ=255)

                                   ccAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGTGGATTCCGAAATATCGCGCAAAATGATTCGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGctct                                                                                  >  2:1071999/1‑140 (MQ=255)

                                       tttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGTTCTTTGa                                                                              <  1:988646/140‑1 (MQ=255)

                                       tttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGa                                                                              <  1:4888/140‑1 (MQ=255)

                                       tttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGa                                                                              <  1:267582/140‑1 (MQ=255)

                                       tttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGa                                                                              <  1:200436/140‑1 (MQ=255)

                                       tttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGa                                                                              <  2:1019387/140‑1 (MQ=255)

                                        ttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGAc                                                                             <  1:144061/140‑1 (MQ=255)

                                          gATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGc                                                                           <  2:225688/140‑1 (MQ=255)

                                          gATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGc                                                                           <  2:903904/140‑1 (MQ=255)

                                          gATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGc                                                                           <  1:286119/140‑1 (MQ=255)

                                                    gccgccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGca                                                                 <  1:585970/140‑1 (MQ=255)

                                                    gccgccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGca                                                                 <  1:50000/140‑1 (MQ=255)

                                                    gccgccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGca                                                                 <  2:611213/140‑1 (MQ=255)

                                                      cgccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACg                                                                            >  1:493249/1‑127 (MQ=255)

                                                      cgccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACg                                                                            <  2:493249/127‑1 (MQ=255)

                                                        ccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGc                                                             <  2:396217/140‑1 (MQ=255)

                                                                     gTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATaa                                                >  1:250204/1‑140 (MQ=255)

                                                                      ttAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATaaa                                               >  2:587536/1‑140 (MQ=255)

                                                                             tGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAgccg                                           >  1:626040/1‑137 (MQ=255)

                                                                             tGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAgccg                                           <  2:626040/137‑1 (MQ=255)

                                                                             tGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCa                                        >  1:901598/1‑140 (MQ=255)

                                                                               cATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAAt                                      >  2:853084/1‑140 (MQ=255)

                                                                               cATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAAt                                      >  2:224366/1‑140 (MQ=255)

                                                                                aTAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATg                                     <  1:853084/140‑1 (MQ=255)

                                                                                   aaaCCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGGGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGgag                                  <  2:138238/140‑1 (MQ=255)

                                                                                        aGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACAt                             <  2:1063470/140‑1 (MQ=255)

                                                                                         gCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATa                            >  2:1050475/1‑140 (MQ=255)

                                                                                             tGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTg                        <  2:250204/140‑1 (MQ=255)

                                                                                                     tCCGAAATATCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAg                <  2:31543/140‑1 (MQ=255)

                                                                                                            tatCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAAc         <  1:122807/140‑1 (MQ=255)

                                                                                                            tatCGCGCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAAc         <  1:203759/140‑1 (MQ=255)

                                                                                                               cgcgCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGca                   <  1:6962/127‑1 (MQ=255)

                                                                                                               cgcgCAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGca                   >  2:6962/1‑127 (MQ=255)

                                                                                                                   cAAAATGATTTGAGAACACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGt  <  1:587536/140‑1 (MQ=255)

ATTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACATAATGCTCTTTGACGCCTCTGTAGCACAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGT  >  NC_000913/4064963‑4065217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A