Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,307,453 A→G V116A (GTT→GCT)  alsK ← D‑allose kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,307,4530AG100.0% 317.7 / NA 90V116A (GTT→GCT) alsKD‑allose kinase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (44/46);  total (44/46)

GCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTTACTGACCAGCG  >  NC_000913/4307318‑4307582
                                                                                                                                       |                                                                                                                                 
gCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTc                                                                                                                               <  2:1020783/140‑1 (MQ=255)
        gtgtGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGaaa                                                                                                                       >  2:116685/1‑140 (MQ=255)
         tgtgCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGaaaa                                                                                                                      >  2:904867/1‑140 (MQ=255)
         tgtgCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGaaaa                                                                                                                      >  2:591039/1‑140 (MQ=255)
           tgCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACt                                                                                                                    >  1:12401/1‑140 (MQ=255)
           tgCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACt                                                                                                                    >  1:816522/1‑140 (MQ=255)
              aCCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCaa                                                                                                                 <  1:573203/140‑1 (MQ=255)
                 cGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCg                                                                                                              >  1:4660/1‑140 (MQ=255)
                  gTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCgg                                                                                                             <  1:87387/140‑1 (MQ=255)
                   tCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGa                                                                                                            >  2:849863/1‑140 (MQ=255)
                   tCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGa                                                                                                            >  2:98643/1‑140 (MQ=255)
                          cgcACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCa                                                                                                     >  2:20090/1‑140 (MQ=255)
                          cgcACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCa                                                                                                     <  2:997936/140‑1 (MQ=255)
                             aCCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCg                                                                                                  >  1:979301/1‑140 (MQ=255)
                             aCCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCg                                                                                                  <  1:849863/140‑1 (MQ=255)
                                          acTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCtt                                                                                     <  1:385432/140‑1 (MQ=255)
                                            tGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGa                                                                                         >  2:149937/1‑134 (MQ=255)
                                            tGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGa                                                                                         <  1:149937/134‑1 (MQ=255)
                                              cGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCg                                                                                 >  1:440463/1‑140 (MQ=255)
                                              cGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCg                                                                                 >  2:259055/1‑140 (MQ=255)
                                              cGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCg                                                                                 >  1:854514/1‑140 (MQ=255)
                                               gAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCgg                                                                                <  2:854514/140‑1 (MQ=255)
                                               gAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCgg                                                                                <  2:430365/140‑1 (MQ=255)
                                                aaCCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGc                                                                               >  1:520053/1‑140 (MQ=255)
                                                aaCCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGc                                                                               >  1:963094/1‑140 (MQ=255)
                                                  ccccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCga                                                                             <  2:979301/140‑1 (MQ=255)
                                                  ccccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCga                                                                             <  1:762453/140‑1 (MQ=255)
                                                  ccccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCga                                                                             <  1:98643/140‑1 (MQ=255)
                                                    ccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga                                                                           <  1:259055/140‑1 (MQ=255)
                                                    ccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga                                                                           <  1:116685/140‑1 (MQ=255)
                                                    ccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga                                                                           <  2:60777/140‑1 (MQ=255)
                                                    ccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga                                                                           <  2:520053/140‑1 (MQ=255)
                                                    ccATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga                                                                           <  2:633741/140‑1 (MQ=255)
                                                     cATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGAt                                                                          <  1:1666/140‑1 (MQ=255)
                                                      aTCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATc                                                                         >  1:81482/1‑140 (MQ=255)
                                                      aTCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATc                                                                         >  1:870350/1‑140 (MQ=255)
                                                        ccccGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCgg                                                                                <  1:434222/131‑1 (MQ=255)
                                                        ccccGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCgg                                                                                >  2:434222/1‑131 (MQ=255)
                                                        ccccGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCat                                                                       <  2:1004651/140‑1 (MQ=255)
                                                        ccccGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCat                                                                       >  1:1004651/1‑140 (MQ=255)
                                                        ccccGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCat                                                                       <  1:20090/140‑1 (MQ=255)
                                                             tACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGc                                                                               <  2:556107/127‑1 (MQ=255)
                                                             tACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGc                                                                               >  1:556107/1‑127 (MQ=255)
                                                             tACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATaaa                                                                  >  1:781714/1‑140 (MQ=255)
                                                             tACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATaaa                                                                  >  1:684001/1‑140 (MQ=255)
                                                             tACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATaaa                                                                  >  2:708537/1‑140 (MQ=255)
                                                                 gagaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATccg                                                              >  1:577114/1‑140 (MQ=255)
                                                                 gagaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATccg                                                              >  2:965309/1‑140 (MQ=255)
                                                                  agaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGc                                                                               <  1:889073/122‑1 (MQ=255)
                                                                  agaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGc                                                                               >  2:889073/1‑122 (MQ=255)
                                                                  agaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga                                                                           <  2:300835/126‑1 (MQ=255)
                                                                  agaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga                                                                           >  1:300835/1‑126 (MQ=255)
                                                                  agaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATccgc                                                             >  1:665384/1‑140 (MQ=255)
                                                                  agaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATccgc                                                             >  1:1109703/1‑140 (MQ=255)
                                                                  agaTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATccgc                                                             >  1:318030/1‑140 (MQ=255)
                                                                    aTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATccgccg                                                           <  1:591039/140‑1 (MQ=255)
                                                                       ggCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTg                                                        >  2:75255/1‑140 (MQ=255)
                                                                       ggCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTg                                                        >  2:1064577/1‑140 (MQ=255)
                                                                        gccgccAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGt                                                       >  1:586460/1‑140 (MQ=255)
                                                                          cgccAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTa                                                     >  1:129199/1‑140 (MQ=255)
                                                                              aGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACgg                                                 <  1:1036302/140‑1 (MQ=255)
                                                                               gAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGc                                                <  1:75255/140‑1 (MQ=255)
                                                                                   cAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGt                                            <  2:586460/140‑1 (MQ=255)
                                                                                    aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGtt                                           <  1:965309/140‑1 (MQ=255)
                                                                                    aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGtt                                           <  2:12401/140‑1 (MQ=255)
                                                                                    aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGtt                                           <  2:129199/140‑1 (MQ=255)
                                                                                     gttgttGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTa                                          <  2:816522/140‑1 (MQ=255)
                                                                                          tgCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGt                                     <  2:963094/140‑1 (MQ=255)
                                                                                                    cagtttCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATg                           <  1:547009/137‑1 (MQ=255)
                                                                                                     gTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATgg                          <  2:1109703/140‑1 (MQ=255)
                                                                                                         tCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCg                      <  2:4660/140‑1 (MQ=255)
                                                                                                         tCTACTACGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCg                      <  2:781714/140‑1 (MQ=255)
                                                                                                          ctactaCGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGt                     <  2:684001/140‑1 (MQ=255)
                                                                                                              tacGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTAt                 <  2:870350/140‑1 (MQ=255)
                                                                                                              tacGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTAt                 <  2:577114/140‑1 (MQ=255)
                                                                                                                cGTCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGGAGAAATAATGGTGCGTTTATCt               >  2:666246/1‑140 (MQ=255)
                                                                                                                  tCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCg                      >  1:528727/1‑131 (MQ=255)
                                                                                                                  tCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCg                      >  1:500283/1‑131 (MQ=255)
                                                                                                                  tCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCg                      <  2:528727/131‑1 (MQ=255)
                                                                                                                  tCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCg                      <  2:500283/131‑1 (MQ=255)
                                                                                                                  tCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCttt             >  1:495291/1‑140 (MQ=255)
                                                                                                                  tCCCAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGGTTGGCGGAGAAAAAATGGTGCGTTTTTCctt             >  2:547009/1‑140 (MQ=255)
                                                                                                                   cccAGGAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCtttt            >  1:575274/1‑139 (MQ=255)
                                                                                                                       ggAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTAt                 <  1:978210/131‑1 (MQ=255)
                                                                                                                       ggAGAGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTAt                 >  2:978210/1‑131 (MQ=255)
                                                                                                                        gagaGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTg                        <  1:446596/123‑1 (MQ=255)
                                                                                                                        gagaGTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTg                        >  2:446596/1‑123 (MQ=255)
                                                                                                                           agTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTTACTGACCAg    >  2:181465/1‑140 (MQ=255)
                                                                                                                           agTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTTACTGACCAg    <  2:42337/140‑1 (MQ=255)
                                                                                                                           agTTGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTTACTGACCAg    <  1:1064577/140‑1 (MQ=255)
                                                                                                                             ttGCAGGTTAGCGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTTACTGACCAgcg  >  1:991612/1‑140 (MQ=255)
                                                                                                                             ttGCAGGCTAGCGTCGCAGGAAAACCCAACCGGACAATTCCGCGTATTTTCGAGCTTATCGCCGAGATCATATAAATCCGCCGCTGTTAACGGCAGAAGCGGTGGAGAAAAAATAGAGCGATTATCGTTAGTCATCAgcg  >  2:986346/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                 
GCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTTACTGACCAGCG  >  NC_000913/4307318‑4307582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A