Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,488,964 T→C D367G (GAT→GGT)  yjgR ← DUF853 domain‑containing protein YjgR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,488,9640TC100.0% 241.3 / NA 68D367G (GAT→GGT) yjgRDUF853 domain‑containing protein YjgR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/32);  total (36/32)

CACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGC  >  NC_000913/4488828‑4489100
                                                                                                                                        |                                                                                                                                        
cACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCa                                                                                                                                       >  2:819087/1‑140 (MQ=255)
cACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCa                                                                                                                                       <  2:96789/140‑1 (MQ=255)
     catcctcatATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGaaaa                                                                                                                                  <  1:655555/140‑1 (MQ=255)
        cctcatATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAagag                                                                                                                               >  1:1074212/1‑140 (MQ=255)
            atatTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCAccc                                                                                                                                        >  1:132700/1‑127 (MQ=255)
             tatTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCaa                                                                                                                          <  1:821623/140‑1 (MQ=255)
                  gCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCt                                                                                                                     <  2:920288/140‑1 (MQ=255)
                  gCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCt                                                                                                                     >  2:623342/1‑140 (MQ=255)
                     aTACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGc                                                                                                                  <  2:495975/140‑1 (MQ=255)
                       acacCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCg                                                                                                                <  2:442943/140‑1 (MQ=255)
                        cacCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCgg                                                                                                               >  2:541543/1‑140 (MQ=255)
                          ccGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTg                                                                                                             >  1:4633/1‑140 (MQ=255)
                           cGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGc                                                                                                                  >  2:894061/1‑134 (MQ=255)
                           cGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGc                                                                                                                  <  1:894061/134‑1 (MQ=255)
                            ggAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGCAAAGAGATCAACGCCTCGCCGGTGcc                                                                                                           <  1:429429/140‑1 (MQ=255)
                             gagaGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCg                                                                                                                >  1:707258/1‑134 (MQ=255)
                             gagaGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCg                                                                                                                <  2:707258/134‑1 (MQ=255)
                             gagaGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGccc                                                                                                          <  2:655878/140‑1 (MQ=255)
                             gagaGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGccc                                                                                                          <  2:102871/140‑1 (MQ=255)
                                  tGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTc                                                                                                     >  2:428312/1‑140 (MQ=255)
                                  tGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTc                                                                                                     >  1:467675/1‑140 (MQ=255)
                                  tGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTc                                                                                                     >  1:975313/1‑140 (MQ=255)
                                   gATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTcc                                                                                                    >  1:689106/1‑140 (MQ=255)
                                    aTTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCt                                                                                                   <  1:819087/140‑1 (MQ=255)
                                            aGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGcc                                                                                           >  1:552960/1‑140 (MQ=255)
                                            aGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGcc                                                                                           >  2:373028/1‑140 (MQ=255)
                                            aGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGcc                                                                                           >  1:377923/1‑140 (MQ=255)
                                              ccATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCtt                                                                                         >  2:1109202/1‑140 (MQ=255)
                                                  tACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCTCAGTTCCTGAATCGCCTTTTCg                                                                                     >  2:591294/1‑140 (MQ=255)
                                                  tACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCg                                                                                     <  1:373028/140‑1 (MQ=255)
                                                  tACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCg                                                                                     <  1:541543/140‑1 (MQ=255)
                                                            ttCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACg                                                                           <  2:377923/140‑1 (MQ=255)
                                                                 tCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGa                                                                      >  1:362720/1‑140 (MQ=255)
                                                                   aCCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGAtt                                                                    >  2:434904/1‑140 (MQ=255)
                                                                   aCCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGAtt                                                                    >  1:208844/1‑140 (MQ=255)
                                                                        ccccATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGccc                                                               >  2:915244/1‑140 (MQ=255)
                                                                          ccATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGc                                                             <  1:806556/140‑1 (MQ=255)
                                                                          ccATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGc                                                             <  2:362720/140‑1 (MQ=255)
                                                                           cATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCa                                                            <  1:941899/140‑1 (MQ=255)
                                                                             tCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATg                                                          >  1:821235/1‑140 (MQ=255)
                                                                                  gAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTg                                                     >  1:951337/1‑140 (MQ=255)
                                                                                        ggCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGcgccgc                                               >  2:311552/1‑140 (MQ=255)
                                                                                         gcgcGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCt                                              <  1:434904/140‑1 (MQ=255)
                                                                                         gcgcGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCt                                              <  2:951337/140‑1 (MQ=255)
                                                                                              aTCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCtt                                         >  2:350079/1‑140 (MQ=255)
                                                                                              aTCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCtt                                         >  2:653033/1‑140 (MQ=255)
                                                                                                  ccATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACt                                     <  2:132330/140‑1 (MQ=255)
                                                                                                  ccATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACt                                     <  1:653033/140‑1 (MQ=255)
                                                                                                  ccATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTACCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACt                                     <  1:350079/140‑1 (MQ=255)
                                                                                                   cATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTg                                    <  1:915244/140‑1 (MQ=255)
                                                                                                      cGCACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCtt                                 <  2:1074212/140‑1 (MQ=255)
                                                                                                        cACGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTc                               >  2:335322/1‑140 (MQ=255)
                                                                                                        cACGCCCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTc                               >  1:965022/1‑140 (MQ=255)
                                                                                                          cGCTCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTg                             <  2:208844/140‑1 (MQ=255)
                                                                                                             tCCACCACAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATc                          >  2:395201/1‑140 (MQ=255)
                                                                                                                accacAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCttt                       <  1:311552/140‑1 (MQ=255)
                                                                                                                accacAGAAGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCatt                       <  2:965022/140‑1 (MQ=255)
                                                                                                                       aaGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTa                >  2:245169/1‑140 (MQ=255)
                                                                                                                       aaGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTa                >  1:785733/1‑140 (MQ=255)
                                                                                                                       aaGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTa                >  2:745880/1‑140 (MQ=255)
                                                                                                                       aaGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTa                >  1:693629/1‑140 (MQ=255)
                                                                                                                       aaGGGCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTa                >  1:117904/1‑140 (MQ=255)
                                                                                                                          ggCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTaaaa             >  2:984632/1‑140 (MQ=255)
                                                                                                                          ggCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGCTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTaaaa             <  2:785733/140‑1 (MQ=255)
                                                                                                                           gCTTCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAg            >  1:720495/1‑140 (MQ=255)
                                                                                                                              tCCTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGccc         >  1:113647/1‑140 (MQ=255)
                                                                                                                                cTTTCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGc       <  2:689106/140‑1 (MQ=255)
                                                                                                                                 tttCGCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCa      <  2:552960/140‑1 (MQ=255)
                                                                                                                                     gCACCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAGGCCCGCAAAGc  <  1:623342/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
CACCTCATCCTCATATTTGCCATACACCGGAGAGTGATTAATCAAGCCATTACGCTCATCTTCCGTCACCGGCCCCATCCGCGAACAAGGCGCGATCACCATCGCACGCTCCACCACAGAAGGGCTTCCTTTCGCATCCAGAAAAGAGATCAACGCCTCGCCGGTGCCCAGTTCCTGAATCGCCTTTTCGGTATCAAACGCCGGATTGGCCCGCATGGTTTGCGCCGCTGCCTTCACTGCTTTCTGATCTTTTGGCGTAAAAGCCCGCAAAGC  >  NC_000913/4488828‑4489100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A