Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,561,940	T→C	T246A (ACC→GCC)	yjiJ ←	putative transporter YjiJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,561,940	0	T	C	100.0%	253.1 / NA	72	T246A (ACC→GCC)	yjiJ	putative transporter YjiJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/38); total (34/38)

AGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCAATG  >  NC_000913/4561803‑4562074

agTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTa                                                                                                                                      >  2:135522/1‑140 (MQ=255)

  tAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAAc                                                                                                                                    >  2:302192/1‑140 (MQ=255)

     gcagcaCACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTa                                                                                                                                      <  1:200035/135‑1 (MQ=255)

     gcagcaCACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTa                                                                                                                                      >  2:200035/1‑135 (MQ=255)

         cacacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTg                                                                                                                             >  1:57418/1‑140 (MQ=255)

         cacacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTg                                                                                                                             >  2:689594/1‑140 (MQ=255)

         cacacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTg                                                                                                                             >  2:189889/1‑140 (MQ=255)

          acacaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGa                                                                                                                            >  1:834374/1‑140 (MQ=255)

            acaGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGc                                                                                                                          >  1:134532/1‑140 (MQ=255)

                aTAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAg                                                                                                                           <  2:525741/135‑1 (MQ=255)

                aTAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAg                                                                                                                           >  1:525741/1‑135 (MQ=255)

                  aGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCAt                                                                                                                    <  2:57418/140‑1 (MQ=255)

                   gCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATc                                                                                                                   >  1:591890/1‑140 (MQ=255)

                   gCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATc                                                                                                                   >  1:566709/1‑140 (MQ=255)

                   gCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATc                                                                                                                   >  2:625486/1‑140 (MQ=255)

                   gCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATc                                                                                                                   >  2:993910/1‑140 (MQ=255)

                     cTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGt                                                                                                                              <  2:678569/127‑1 (MQ=255)

                     cTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGt                                                                                                                              >  1:678569/1‑127 (MQ=255)

                      tGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCttt                                                                                                                >  2:1039539/1‑140 (MQ=255)

                          ccAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGcc                                                                                                            <  2:465787/140‑1 (MQ=255)

                          ccAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGcc                                                                                                            <  2:1051156/140‑1 (MQ=255)

                              cAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGa                                                                                                        >  1:120172/1‑140 (MQ=255)

                               tttgctgCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAg                                                                                                       <  2:1253/134‑1 (MQ=255)

                                aaTTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGc                                                                                                      <  1:1032924/140‑1 (MQ=255)

                                  ttCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCgg                                                                                                    <  1:246260/140‑1 (MQ=255)

                                  ttCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCgg                                                                                                    <  2:120172/140‑1 (MQ=255)

                                                 ggCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGcgac                                                                                     <  1:625486/140‑1 (MQ=255)

                                                  gCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGcgacg                                                                                    <  2:566709/140‑1 (MQ=255)

                                                  gCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGcgacg                                                                                    <  1:135522/140‑1 (MQ=255)

                                                  gCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGcgacg                                                                                    <  1:578359/140‑1 (MQ=255)

                                                       gCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACgatgat                                                                               >  1:848893/1‑140 (MQ=255)

                                                           cccAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATaa                                                                           >  2:54074/1‑140 (MQ=255)

                                                            ccAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAAc                                                                          <  2:974689/140‑1 (MQ=255)

                                                                cGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCaaa                                                                      <  2:381691/140‑1 (MQ=255)

                                                                     tgctgcCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCg                                                                 >  1:87980/1‑140 (MQ=255)

                                                                       ctgcCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGcc                                                               <  2:591890/140‑1 (MQ=255)

                                                                       ctgcCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGGCAAGAGATGGGGGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATACCCAAATCCCGcc                                                               <  2:1017278/140‑1 (MQ=255)

                                                                          cccATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAgg                                                            <  2:134532/140‑1 (MQ=255)

                                                                          cccATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAgg                                                            <  2:848893/140‑1 (MQ=255)

                                                                          cccATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAgg                                                            <  1:749489/140‑1 (MQ=255)

                                                                          cccATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAgg                                                            <  2:87980/140‑1 (MQ=255)

                                                                              tAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGt                                                        <  2:27898/140‑1 (MQ=255)

                                                                              tAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGt                                                        <  1:909743/140‑1 (MQ=255)

                                                                                    gccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTAc                                                      >  2:87541/1‑136 (MQ=255)

                                                                                    gccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTAc                                                      <  1:87541/136‑1 (MQ=255)

                                                                                    gccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGaa                                                  >  2:1118212/1‑140 (MQ=255)

                                                                                    gccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGaa                                                  >  2:163847/1‑140 (MQ=255)

                                                                                    gccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGaa                                                  >  1:221742/1‑140 (MQ=255)

                                                                                    gccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGaa                                                  >  2:416558/1‑140 (MQ=255)

                                                                                    gccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGGACAGaa                                                  >  2:971562/1‑140 (MQ=255)

                                                                                     ccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGt                                                        >  1:802205/1‑133 (MQ=255)

                                                                                     ccaAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGt                                                        <  2:802205/133‑1 (MQ=255)

                                                                                        aaGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGc                                              <  1:1039539/140‑1 (MQ=255)

                                                                                        aaGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGc                                              <  1:189889/140‑1 (MQ=255)

                                                                                         aGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGcc                                             >  2:615343/1‑140 (MQ=255)

                                                                                                  gCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAaccac                                    <  1:993910/140‑1 (MQ=255)

                                                                                                   cacaATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAaccacc                                   <  2:195267/140‑1 (MQ=255)

                                                                                                   cacaATTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAaccacc                                   <  1:54074/140‑1 (MQ=255)

                                                                                                      aaTTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGc                                <  1:689594/140‑1 (MQ=255)

                                                                                                      aaTTGATAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGc                                <  2:834374/140‑1 (MQ=255)

                                                                                                            tAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTa                          >  2:43219/1‑140 (MQ=255)

                                                                                                            tAAGCCGACTAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTa                          >  1:780251/1‑140 (MQ=255)

                                                                                                                     tAACGTCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCt                 <  2:780251/140‑1 (MQ=255)

                                                                                                                          tCCAGAGATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGtt            >  1:510877/1‑140 (MQ=255)

                                                                                                                             agagATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCAtt                           <  2:813569/122‑1 (MQ=255)

                                                                                                                             agagATGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCAtt                           >  1:813569/1‑122 (MQ=255)

                                                                                                                                 aTGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCt                 >  1:124804/1‑128 (MQ=255)

                                                                                                                                 aTGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCt                 <  2:124804/128‑1 (MQ=255)

                                                                                                                                  tGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCaa    <  1:416558/140‑1 (MQ=255)

                                                                                                                                  tGGGCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCaa    <  1:615343/140‑1 (MQ=255)

                                                                                                                                   gggCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGGTTTTGCCAAt   >  1:1054950/1‑140 (MQ=255)

                                                                                                                                    ggcggcTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCAATg  >  1:1421/1‑140 (MQ=255)

                                                                                                                                    ggcggcTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCAATg  >  2:307864/1‑140 (MQ=255)

                                                                                                                                    ggcggcTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCAATg  >  2:952601/1‑140 (MQ=255)

                                                                                                                                    ggcggcTAACAATGGTGAGCCTGCATCTTTCCCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCAATg  >  2:864415/1‑140 (MQ=255)

                                                                                                                                     gCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCa     <  1:102872/136‑1 (MQ=255)

                                                                                                                                     gCGGCTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCa     >  2:102872/1‑136 (MQ=255)

AGTAAGCAGCACACAGATAGCCTGCACCAGCAAATTCGCCGTCAGGCAGGGCAAAGCCCCCCAACGTTTTGCTGCCCATAGCCAGCCAAAGCAACCAGGCACAATTGATAAGCCGACTAACGTCCAGAGATGGGCGGTTAACAATGGTGAGCCTGCATCTTTCGCCATGAGCGGCAGGTAAGTCGCGACGATGATATAACCAAATCCCGCCAGGCCGTACAGAATAGCCAGTAACCACCAGCTCATTATCTGTTGCTCCGTTTTTGCCAATG  >  NC_000913/4561803‑4562074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A