Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 101,917 A→G T385A (ACC→GCC)  murC → UDP‑N‑acetylmuramate‑‑L‑alanine ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913101,9170AG100.0% 288.4 / NA 80T385A (ACC→GCC) murCUDP‑N‑acetylmuramate‑‑L‑alanine ligase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (36/44);  total (36/44)

TGAATGGTAAAAGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTACCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCTGTGTCGCACAATTC  >  NC_000913/101780‑102052
                                                                                                                                         |                                                                                                                                       
tGAATGGTAAAAGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGcc                                                                                                                                       >  2:213575/1‑140 (MQ=255)
  aaTGGTAAAAGCGGTACGGCAATGCTGGTCGATGACTACGCCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCg                                                                                                                                     <  2:918670/140‑1 (MQ=255)
        aaaaGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCGCCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTAcgcg                                                                                                                               <  1:1024393/140‑1 (MQ=255)
        aaaaGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTAcgcg                                                                                                                               >  1:292866/1‑140 (MQ=255)
        aaaaGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTAcgcg                                                                                                                               <  1:955780/140‑1 (MQ=255)
         aaaGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTa                                                                                                                                   <  1:519819/135‑1 (MQ=255)
         aaaGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTa                                                                                                                                   >  2:519819/1‑135 (MQ=255)
         aaaGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTAcgcgc                                                                                                                              <  1:457555/140‑1 (MQ=255)
         aaaGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTAcgcgc                                                                                                                              <  1:672664/140‑1 (MQ=255)
           aGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGa                                                                                                                            <  1:255311/140‑1 (MQ=255)
            gCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCGTTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAc                                                                                                                           <  1:266020/140‑1 (MQ=255)
            gCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAc                                                                                                                           <  1:213575/140‑1 (MQ=255)
            gCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAc                                                                                                                           <  2:513108/140‑1 (MQ=255)
            gCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAc                                                                                                                           <  1:294737/140‑1 (MQ=255)
             cGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAcc                                                                                                                          <  2:294398/140‑1 (MQ=255)
              ggTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAcc                                                                                                                          <  2:1093958/139‑1 (MQ=255)
              ggTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAcc                                                                                                                          >  1:1093958/1‑139 (MQ=255)
                tACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAcc                                                                                                                          <  2:1102109/137‑1 (MQ=255)
                tACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAcc                                                                                                                          >  1:1102109/1‑137 (MQ=255)
                tACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAc                                                                                                                           >  1:841553/1‑136 (MQ=255)
                tACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGAc                                                                                                                           <  2:841553/136‑1 (MQ=255)
                tACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGt                                                                                                                       >  2:877350/1‑140 (MQ=255)
                        tGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATgatgat                                                                                                               >  1:227646/1‑140 (MQ=255)
                        tGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATgatgat                                                                                                               >  1:124581/1‑140 (MQ=255)
                          cTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACGTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGAttt                                                                                                             >  2:1098699/1‑140 (MQ=255)
                          cTGGTCGATGACTACGGCCACCACCCCACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGAttt                                                                                                             >  1:321417/1‑140 (MQ=255)
                             gTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGc                                                                                                          >  1:344090/1‑140 (MQ=255)
                             gTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGc                                                                                                          >  2:266786/1‑140 (MQ=255)
                             gTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGc                                                                                                          >  1:1064391/1‑140 (MQ=255)
                                  tGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAAtg                                                                                                     >  2:131323/1‑140 (MQ=255)
                                  tGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAAtg                                                                                                     >  2:17828/1‑140 (MQ=255)
                                      tACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCt                                                                                                 <  1:877350/140‑1 (MQ=255)
                                       aCGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTg                                                                                                >  2:928229/1‑140 (MQ=255)
                                          gCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACg                                                                                             <  2:132605/140‑1 (MQ=255)
                                          gCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACg                                                                                             <  2:1064391/140‑1 (MQ=255)
                                          gCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACg                                                                                             <  2:25256/140‑1 (MQ=255)
                                          gCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACg                                                                                             >  1:278158/1‑140 (MQ=255)
                                            caccacCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCa                                                                                           <  2:358859/140‑1 (MQ=255)
                                            caccacCCCACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCa                                                                                           <  2:321417/140‑1 (MQ=255)
                                              ccaccCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCa                                                                                           >  1:680568/1‑138 (MQ=255)
                                              ccaccCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCa                                                                                           <  2:680568/138‑1 (MQ=255)
                                               caccCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACg                                                                                             <  2:106795/135‑1 (MQ=255)
                                               caccCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACg                                                                                             >  1:106795/1‑135 (MQ=255)
                                               caccCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCa                                                                                           <  1:712572/137‑1 (MQ=255)
                                               caccCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCa                                                                                           >  2:712572/1‑137 (MQ=255)
                                               caccCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGt                                                                                        >  2:37807/1‑140 (MQ=255)
                                                 cccGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTg                                                                                      <  2:1010021/140‑1 (MQ=255)
                                                      cGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATAcc                                                                                 <  2:984433/140‑1 (MQ=255)
                                                       ggAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATAccc                                                                                <  1:793196/140‑1 (MQ=255)
                                                        gAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCt                                                                               <  1:928229/140‑1 (MQ=255)
                                                           gTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGtt                                                                            <  2:278158/140‑1 (MQ=255)
                                                           gTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGtt                                                                            >  2:38015/1‑140 (MQ=255)
                                                                 gCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCt                                                                      <  2:1039242/140‑1 (MQ=255)
                                                                   caccaTTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTgg                                                                    >  1:133958/1‑140 (MQ=255)
                                                                     ccaTTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGaa                                                                  <  2:962317/140‑1 (MQ=255)
                                                                                gcgcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTAcgcg                                                                                                                               <  1:1068745/68‑1 (MQ=255)
                                                                                gcgcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTAcgcg                                                                                                                               >  2:1068745/1‑68 (MQ=255)
                                                                                gcgcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGc                                                       >  2:33406/1‑140 (MQ=255)
                                                                                gcgcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGc                                                       <  2:292866/140‑1 (MQ=255)
                                                                                gcgcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGc                                                       >  2:991051/1‑140 (MQ=255)
                                                                                gcgcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGc                                                       >  2:1025842/1‑140 (MQ=255)
                                                                                 cgcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCt                                                      >  1:99216/1‑140 (MQ=255)
                                                                                  gcgcgcAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCGGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTg                                                     >  1:475354/1‑140 (MQ=255)
                                                                                          gCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCGGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAgcg                                             <  2:475354/140‑1 (MQ=255)
                                                                                            tGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGcc                                           <  1:266786/140‑1 (MQ=255)
                                                                                                             ggTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACa                          >  1:1126088/1‑140 (MQ=255)
                                                                                                             ggTAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACa                          <  1:38015/140‑1 (MQ=255)
                                                                                                               tAATGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGc                        <  1:59880/140‑1 (MQ=255)
                                                                                                                  tGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGcc                       >  1:115868/1‑138 (MQ=255)
                                                                                                                  tGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGcc                       <  2:115868/138‑1 (MQ=255)
                                                                                                                  tGCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGt                     <  2:344090/140‑1 (MQ=255)
                                                                                                                   gCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCgg                                   >  2:170696/1‑125 (MQ=255)
                                                                                                                   gCTGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCgg                                   <  1:170696/125‑1 (MQ=255)
                                                                                                                     tGTTTCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCg                  <  1:33406/140‑1 (MQ=255)
                                                                                                                        ttCAGCCGCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCtg               >  2:1133974/1‑140 (MQ=255)
                                                                                                                               gCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCTGTGTCGca        <  2:124581/140‑1 (MQ=255)
                                                                                                                               gCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCTGTGTCGca        <  1:1098699/140‑1 (MQ=255)
                                                                                                                               gCACCGTTTTGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCTGTGTCGca        <  2:227646/140‑1 (MQ=255)
                                                                                                                                     ttttGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCTGTGTCGCACAATTc  >  2:170375/1‑140 (MQ=255)
                                                                                                                                     ttttGCCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCTGTGTCGCACAATTc  >  2:1072505/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TGAATGGTAAAAGCGGTACGGCAATGCTGGTCGATGACTACGGCCACCACCCGACGGAAGTGGACGCCACCATTAAAGCGGCGCGCGCAGGCTGGCCGGATAAAAACCTGGTAATGCTGTTTCAGCCGCACCGTTTTACCCGTACGCGCGACCTGTATGATGATTTCGCCAATGTGCTGACGCAGGTTGATACCCTGTTGATGCTGGAAGTGTATCCGGCTGGCGAAGCGCCAATTCCGGGAGCGGACAGCCGTTCGCTGTGTCGCACAATTC  >  NC_000913/101780‑102052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A