Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,448,665	T→C	Y383H (TAT→CAT)	feaB →	phenylacetaldehyde dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,448,665	0	T	C	100.0%	229.0 / NA	64	Y383H (TAT→CAT)	feaB	phenylacetaldehyde dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/36); total (28/36)

CGGGGATGTCACCTGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGTATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCAAACGACA  >  NC_000913/1448528‑1448797

cGGGGATGTCACCTGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGcat                                                                                                                                    >  1:937463/1‑140 (MQ=255)

 ggggATGTCACCTGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGcatt                                                                                                                                   >  2:1215285/1‑140 (MQ=255)

   ggATGTCACCTGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGcattat                                                                                                                                 >  1:916448/1‑140 (MQ=255)

    gATGTCACCTGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATg                                                                                                                                >  1:709465/1‑140 (MQ=255)

       gTCACCTGTTGCACGGATTAAGCCTTGGGGTTCTCGTGCGCTCTGCGACTAATTGTGTTCATTCCTCGACGATGCGCAGGCACAGCCAGCAGAGCTGATTCGCGGGTCGAATGTACCAGCCGGAGAGGGGCATTATGTTg                                                                                                                             >  2:526905/1‑140 (MQ=255)

             tGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCaa                                                                                                                       <  1:1069055/140‑1 (MQ=255)

             tGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCaa                                                                                                                       <  2:517304/140‑1 (MQ=255)

                 gCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCt                                                                                                                   >  2:27762/1‑140 (MQ=255)

                      gATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCtggtgg                                                                                                              >  1:432490/1‑140 (MQ=255)

                       aTTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGc                                                                                                                    >  1:607326/1‑133 (MQ=255)

                       aTTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGc                                                                                                                    <  2:607326/133‑1 (MQ=255)

                       aTTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTggtggt                                                                                                             >  1:67920/1‑140 (MQ=255)

                          aaCCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTaaa                                                                                                          >  2:182292/1‑140 (MQ=255)

                             ccTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATcc                                                                                                       <  2:937463/140‑1 (MQ=255)

                             ccTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATcc                                                                                                       <  1:182292/140‑1 (MQ=255)

                             ccTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATcc                                                                                                       <  2:432490/140‑1 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGGCGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGAt                                                                                                   >  1:1232419/1‑140 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATcc                                                                                                       >  2:9230/1‑136 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATcc                                                                                                       <  1:9230/136‑1 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGAt                                                                                                   >  2:1203007/1‑140 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGAt                                                                                                   >  2:842825/1‑140 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGAt                                                                                                   >  2:1241844/1‑140 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGAt                                                                                                   >  2:314766/1‑140 (MQ=255)

                                 tGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCCCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGCAAATCCCGAt                                                                                                   >  2:314767/1‑140 (MQ=255)

                                       ctcGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTaaa                                                                                             <  1:660894/140‑1 (MQ=255)

                                        tcGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAAt                                                                                            <  1:27762/140‑1 (MQ=255)

                                        tcGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAAt                                                                                            <  2:741850/140‑1 (MQ=255)

                                               cACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCtt                                                                                     <  2:632634/140‑1 (MQ=255)

                                                  tGCGACAAAGTGTGTTCATTCCTCGGCGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAAc                                                                                  <  2:1232419/140‑1 (MQ=255)

                                                  tGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAAc                                                                                  <  2:709465/140‑1 (MQ=255)

                                                    cGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGAGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGACGCTAAAt                                                                                            >  1:345256/1‑128 (MQ=255)

                                                    cGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGAGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGACGCTAAAt                                                                                            <  2:345256/128‑1 (MQ=255)

                                                       cAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTg                                                                             <  2:405419/140‑1 (MQ=255)

                                                           gtgtgtTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAaga                                                                         <  1:998244/140‑1 (MQ=255)

                                                            tgtgtTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGTCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAagag                                                                        >  1:18499/1‑140 (MQ=255)

                                                            tgtgtTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTc                                                                                <  1:1109359/132‑1 (MQ=255)

                                                            tgtgtTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTc                                                                                >  2:1109359/1‑132 (MQ=255)

                                                              tgtTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCATGAAGAGgt                                                                      >  1:943776/1‑140 (MQ=255)

                                                               gtTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGgtg                                                                     >  2:297430/1‑140 (MQ=255)

                                                                      ccTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTc                                                              >  2:884607/1‑140 (MQ=255)

                                                                      ccTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTc                                                              >  2:245239/1‑140 (MQ=255)

                                                                       cTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTcc                                                             <  1:1203007/140‑1 (MQ=255)

                                                                        tCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCg                                                            <  1:998175/140‑1 (MQ=255)

                                                                        tCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCg                                                            <  1:842825/140‑1 (MQ=255)

                                                                        tCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCg                                                            <  2:410728/140‑1 (MQ=255)

                                                                          gacgaTGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCggt                                                          <  1:884607/140‑1 (MQ=255)

                                                                          gacgaTGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCggt                                                          <  1:245239/140‑1 (MQ=255)

                                                                               tGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTaa                                                     >  2:704415/1‑140 (MQ=255)

                                                                               tGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTaa                                                     >  2:617543/1‑140 (MQ=255)

                                                                               tGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTaa                                                     >  2:710966/1‑140 (MQ=255)

                                                                               tGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTaa                                                     >  1:1226572/1‑140 (MQ=255)

                                                                               tGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTaa                                                     >  2:336901/1‑140 (MQ=255)

                                                                               tGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTaa                                                     >  1:450219/1‑140 (MQ=255)

                                                                                 cgcAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAAc                                                   <  1:1215285/140‑1 (MQ=255)

                                                                                 cgcAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAAc                                                   >  1:1204035/1‑140 (MQ=255)

                                                                                      gCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGt                                              <  1:1115224/140‑1 (MQ=255)

                                                                                        acaGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGc                                            <  2:154115/140‑1 (MQ=255)

                                                                                              agcaGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAg                                      <  1:336901/140‑1 (MQ=255)

                                                                                                   agCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGCAt                                 <  2:117547/140‑1 (MQ=255)

                                                                                                          tCGCGGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGagaag                          <  1:314766/140‑1 (MQ=255)

                                                                                                           cgcgGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGagaaga                         <  2:1204035/140‑1 (MQ=255)

                                                                                                             cgGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAAT‑CCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAagag                        >  2:625129/1‑138 (MQ=255)

                                                                                                             cgGGTCGAATGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAAT‑CCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAagag                        <  1:625129/138‑1 (MQ=255)

                                                                                                                    aaTGGACCAGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACa                <  2:1226572/140‑1 (MQ=255)

                                                                                                                            aGCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCaa        <  2:67920/140‑1 (MQ=255)

                                                                                                                             gCCGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCaaa       <  2:1023812/140‑1 (MQ=255)

                                                                                                                              ccGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCAAAc      >  2:55129/1‑140 (MQ=255)

                                                                                                                               cGGAGAGGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCATGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCAAACg     <  2:943776/140‑1 (MQ=255)

                                                                                                                                  agagGGTCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCAAACGaca  <  2:18499/140‑1 (MQ=255)

                                                                                                                                  agagGGGCATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCAAACGaca  <  1:55129/140‑1 (MQ=255)

CGGGGATGTCACCTGTTGCACAGATTAACCCTTTGGTTTCTCGTGCGCACTGCGACAAAGTGTGTTCATTCCTCGACGATGCGCAGGCACAGCAAGCAGAGCTGATTCGCGGGTCGAATGGACCAGCCGGAGAGGGGTATTATGTTGCGCCAACGCTGGTGGTAAATCCCGATGCTAAATTGCGCTTAACTCGTGAAGAGGTGTTTGGTCCGGTGGTAAACCTGGTGCGAGTAGCGGATGGAGAAGAGGCGTTACAACTGGCAAACGACA  >  NC_000913/1448528‑1448797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A