Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,473,518 G→A pseudogene (3000/3495 nt) ydbA → putative outer membrane protein, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,473,5180GA98.5% 219.4 / ‑4.3 65pseudogene (3000/3495 nt)ydbAputative outer membrane protein, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (34/30);  total (34/31)
Fisher's exact test for biased strand distribution p-value = 4.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.94e-01

TATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACGGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTG  >  NC_000913/1473387‑1473645
                                                                                                                                   |                                                                                                                               
tataGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATAc                                                                                                                         <  1:226864/140‑1 (MQ=255)
     ccAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACg                                                                                                                    >  1:229482/1‑140 (MQ=255)
     ccAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACg                                                                                                                    <  2:121608/140‑1 (MQ=255)
         ttttttGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGaa                                                                                                                >  2:391407/1‑140 (MQ=255)
         ttttttGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGaa                                                                                                                >  1:1177199/1‑140 (MQ=255)
          tttttGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACGGCTGATACCGACGTGaaa                                                                                                               <  2:364559/140‑1 (MQ=255)
            tttGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAAca                                                                                                             <  2:882311/140‑1 (MQ=255)
              tGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAAcagc                                                                                                           >  1:604634/1‑140 (MQ=255)
              tGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAAcagc                                                                                                           <  2:395074/140‑1 (MQ=255)
               ggCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAAcagca                                                                                                          <  2:250181/140‑1 (MQ=255)
               ggCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAAcagca                                                                                                          <  2:229482/140‑1 (MQ=255)
                          tCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGt                                                                                               >  2:469000/1‑140 (MQ=255)
                               tGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGc                                                                                          >  2:141816/1‑140 (MQ=255)
                                   gTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCg                                                                                      >  1:659822/1‑140 (MQ=255)
                                   gTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCg                                                                                      <  1:391407/140‑1 (MQ=255)
                                        aTAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAggg                                                                                 >  2:1174943/1‑140 (MQ=255)
                                             ggCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGaa                                                                            <  1:305132/140‑1 (MQ=255)
                                                    aCTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGAAAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTc                                                                     >  2:917864/1‑140 (MQ=255)
                                                            aaCGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAg                                                             <  2:1023170/140‑1 (MQ=255)
                                                            aaCGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAg                                                             <  1:1174943/140‑1 (MQ=255)
                                                            aaCGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTCCGAACCGAg                                                             <  1:301533/140‑1 (MQ=255)
                                                              cGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCg                                                           >  1:262645/1‑140 (MQ=255)
                                                              cGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCg                                                           >  2:909863/1‑140 (MQ=255)
                                                              cGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCg                                                           >  1:566475/1‑140 (MQ=255)
                                                                   tGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGa                                                      >  1:1248223/1‑140 (MQ=255)
                                                                     cGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACt                                                    <  1:900332/140‑1 (MQ=255)
                                                                     cGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACt                                                    <  2:74341/140‑1 (MQ=255)
                                                                     cGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACt                                                    <  2:604634/140‑1 (MQ=255)
                                                                     cGTTACGACGTTCACAACCTTGAAAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACt                                                    <  1:917864/140‑1 (MQ=255)
                                                                      gTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTg                                                   <  1:141816/140‑1 (MQ=255)
                                                                          cgacgTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGaa                                                         >  2:360942/1‑130 (MQ=255)
                                                                          cgacgTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGaa                                                         <  1:360942/130‑1 (MQ=255)
                                                                               ttCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACg                                          >  1:1037924/1‑140 (MQ=255)
                                                                                    aaCCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGa                                                  <  1:821242/127‑1 (MQ=255)
                                                                                    aaCCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGa                                                  >  2:821242/1‑127 (MQ=255)
                                                                                       cTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGc                                  >  1:279313/1‑140 (MQ=255)
                                                                                         tGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCgg                                >  1:791279/1‑140 (MQ=255)
                                                                                           aCAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGc                                  >  1:965646/1‑136 (MQ=255)
                                                                                           aCAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGc                                  <  2:965646/136‑1 (MQ=255)
                                                                                           aCAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGgt                              >  1:928904/1‑140 (MQ=255)
                                                                                            cagcagCCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGgtg                             <  1:469000/140‑1 (MQ=255)
                                                                                               cagcCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTaa                          <  1:909863/140‑1 (MQ=255)
                                                                                                agcCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTaaa                         >  1:136146/1‑140 (MQ=255)
                                                                                                 gcCGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTaaaa                        >  2:489620/1‑140 (MQ=255)
                                                                                                  ccGCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAAc                       >  2:680280/1‑140 (MQ=255)
                                                                                                    gCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACt                      >  2:1149295/1‑139 (MQ=255)
                                                                                                    gCTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACt                      <  1:1149295/139‑1 (MQ=255)
                                                                                                     cTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGc                    >  1:369073/1‑140 (MQ=255)
                                                                                                     cTCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGc                    >  2:84787/1‑140 (MQ=255)
                                                                                                      tCGATTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCg                   <  2:369073/140‑1 (MQ=255)
                                                                                                         aTTGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTca                <  2:1248223/140‑1 (MQ=255)
                                                                                                          ttGCATTTGGCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTcac               <  2:262645/140‑1 (MQ=255)
                                                                                                                  ggCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGa       >  1:474840/1‑140 (MQ=255)
                                                                                                                  ggCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGa       >  1:1095469/1‑140 (MQ=255)
                                                                                                                   gCAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGaa      <  1:104753/140‑1 (MQ=255)
                                                                                                                    cAACACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAg     >  1:99936/1‑140 (MQ=255)
                                                                                                                     aaCACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAgg    <  1:892251/140‑1 (MQ=255)
                                                                                                                     aaCACGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAgg    <  2:99936/140‑1 (MQ=255)
                                                                                                                       cacGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTcac               <  2:1162834/127‑1 (MQ=255)
                                                                                                                       cacGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTcac               >  1:1162834/1‑127 (MQ=255)
                                                                                                                       cacGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTg  >  1:662653/1‑140 (MQ=255)
                                                                                                                       cacGAACAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTg  >  1:507492/1‑140 (MQ=255)
                                                                                                                             cAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAgg    <  2:365858/132‑1 (MQ=255)
                                                                                                                             cAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAgg    <  1:889340/132‑1 (MQ=255)
                                                                                                                             cAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAgg    >  2:889340/1‑132 (MQ=255)
                                                                                                                             cAAAACAGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAgg    >  1:365858/1‑132 (MQ=255)
                                                                                                                                   |                                                                                                                               
TATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACTGGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAACAAAACGGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAACCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTG  >  NC_000913/1473387‑1473645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A