Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,544,945	T→C	N257S (AAC→AGC)	yddK ←	leucine‑rich repeat domain‑containing protein YddK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,544,945	0	T	C	100.0%	254.1 / NA	71	N257S (AAC→AGC)	yddK	leucine‑rich repeat domain‑containing protein YddK
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/34); total (37/34)

TATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTACC  >  NC_000913/1544811‑1545081

tattaGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCta                                                                                                                                     <  2:759776/140‑1 (MQ=255)

       aTCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGaa                                                                                                                                >  1:850231/1‑138 (MQ=255)

       aTCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGaa                                                                                                                                <  2:850231/138‑1 (MQ=255)

       aTCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAata                                                                                                                              >  2:310212/1‑140 (MQ=255)

       aTCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAata                                                                                                                              >  1:806423/1‑140 (MQ=255)

        tCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTAGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAatat                                                                                                                             <  1:1216612/140‑1 (MQ=255)

        tCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTAGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAatat                                                                                                                             >  2:1216612/1‑140 (MQ=255)

            tgtgGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTa                                                                                                                         >  1:801297/1‑140 (MQ=255)

            tgtgGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTa                                                                                                                         >  1:753491/1‑140 (MQ=255)

            tgtgGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTa                                                                                                                         >  2:1001926/1‑140 (MQ=255)

            tgtgGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTa                                                                                                                         >  2:773511/1‑140 (MQ=255)

                  ttattttattATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCa                                                                                                                   >  1:815810/1‑140 (MQ=255)

                    attttattATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGa                                                                                                                 >  2:1036005/1‑140 (MQ=255)

                           tattGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCaaa                                                                                                          <  1:1138541/140‑1 (MQ=255)

                               gTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAAttgt                                                                                                      >  1:151238/1‑140 (MQ=255)

                               gTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAAttgt                                                                                                      >  2:425077/1‑140 (MQ=255)

                               gTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAAttgt                                                                                                      >  2:91887/1‑140 (MQ=255)

                                tCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAAttgtt                                                                                                     >  2:334437/1‑140 (MQ=255)

                                tCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAAttgtt                                                                                                     >  2:60460/1‑140 (MQ=255)

                                  cAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATtgttgt                                                                                                   >  2:249806/1‑140 (MQ=255)

                                   aGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTgttgtt                                                                                                  <  2:400082/140‑1 (MQ=255)

                                    gTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTta                                                                                                 <  2:151238/140‑1 (MQ=255)

                                      cTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTtaat                                                                                               <  1:819900/140‑1 (MQ=255)

                                           aCTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTa                                                                                          <  1:504383/140‑1 (MQ=255)

                                           aCTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTa                                                                                          <  2:801297/140‑1 (MQ=255)

                                               ttGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGt                                                                                      >  1:191441/1‑140 (MQ=255)

                                               ttGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGt                                                                                      >  2:249216/1‑140 (MQ=255)

                                                      aTGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAg                                                                               <  1:334437/140‑1 (MQ=255)

                                                         gAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTg                                                                            <  1:249216/140‑1 (MQ=255)

                                                                 gTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATaa                                                                    >  1:819771/1‑140 (MQ=255)

                                                                    aGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTc                                                                 >  2:613839/1‑140 (MQ=255)

                                                                    aGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTc                                                                 >  2:974218/1‑140 (MQ=255)

                                                                     ggAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCa                                                                <  1:790669/140‑1 (MQ=255)

                                                                      gAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCAt                                                               >  2:509900/1‑140 (MQ=255)

                                                                      gAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCAt                                                               >  2:76449/1‑140 (MQ=255)

                                                                       aaaTCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCAtt                                                              <  2:191441/140‑1 (MQ=255)

                                                                           cAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTgtgt                                                          >  1:893958/1‑140 (MQ=255)

                                                                           cAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTgtgt                                                          >  1:496996/1‑140 (MQ=255)

                                                                                       atTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGt                                              <  1:229571/140‑1 (MQ=255)

                                                                                        tttCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGtt                                             <  2:496996/140‑1 (MQ=255)

                                                                                        tttCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGtt                                             <  2:806423/140‑1 (MQ=255)

                                                                                        tttCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGtt                                             <  2:893958/140‑1 (MQ=255)

                                                                                         ttCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGttt                                            >  2:980523/1‑140 (MQ=255)

                                                                                         ttCAACTGGTTATTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGttt                                            >  1:340800/1‑140 (MQ=255)

                                                                                            aaCTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAATTGGGAAATAAGTCATTGTGTAAACTTGTTAGTttatt                                         <  1:249806/140‑1 (MQ=255)

                                                                                             aCTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTttatta                                        <  1:1112675/140‑1 (MQ=255)

                                                                                             aCTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTttatta                                        <  1:773511/140‑1 (MQ=255)

                                                                                                 gttgttAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATggg                                    <  1:425077/140‑1 (MQ=255)

                                                                                                 gttgttAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATggg                                    <  1:60460/140‑1 (MQ=255)

                                                                                                   tgttAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGATAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGAt                                  <  2:936198/140‑1 (MQ=255)

                                                                                                   tgttAGCAGCGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGAt                                  <  1:91887/140‑1 (MQ=255)

                                                                                                         cagcGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATcc                            >  2:494495/1‑140 (MQ=255)

                                                                                                         cagcGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATcc                            <  2:715776/140‑1 (MQ=255)

                                                                                                           gcGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCcag                          >  2:663451/1‑140 (MQ=255)

                                                                                                           gcGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCcag                          >  1:283120/1‑140 (MQ=255)

                                                                                                           gcGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAG‑AAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTttatt                                         >  2:1254166/1‑124 (MQ=255)

                                                                                                           gcGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAG‑AAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTttatt                                         <  1:1254166/124‑1 (MQ=255)

                                                                                                            cGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGAt                                  <  2:457659/131‑1 (MQ=255)

                                                                                                            cGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGAt                                  >  1:457659/1‑131 (MQ=255)

                                                                                                            cGTTTAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCcagc                         <  2:1187070/140‑1 (MQ=255)

                                                                                                                tAATGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTa                     >  2:623916/1‑140 (MQ=255)

                                                                                                                   tGTCTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAaga                  <  1:1001926/140‑1 (MQ=255)

                                                                                                                      cTGAACATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGtt               <  2:855395/140‑1 (MQ=255)

                                                                                                                         aaCATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCAt            >  1:232341/1‑140 (MQ=255)

                                                                                                                         aaCATTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCAt            >  1:913387/1‑140 (MQ=255)

                                                                                                                            aTTGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCAtttt         >  2:723684/1‑140 (MQ=255)

                                                                                                                              tGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCATTTtta       >  1:711958/1‑140 (MQ=255)

                                                                                                                              tGCAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCATTTtta       <  1:974218/140‑1 (MQ=255)

                                                                                                                                cAGAAGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCATTTttatt     <  1:509900/140‑1 (MQ=255)

                                                                                                                                   aaGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTAcc  <  1:759673/140‑1 (MQ=255)

                                                                                                                                   aaGCTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTAcc  <  1:980523/140‑1 (MQ=255)

TATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTACC  >  NC_000913/1544811‑1545081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A