Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,587,884	A→G	F138S (TTT→TCT)	ydeR ←	putative fimbrial protein YdeR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,587,884	0	A	G	100.0%	252.3 / NA	70	F138S (TTT→TCT)	ydeR	putative fimbrial protein YdeR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (30/40); total (30/40)

GGTTAAAAATTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAAACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAACCCGTATTG  >  NC_000913/1587747‑1588018

ggTTAAAAATTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGAc                                                                                                                                      >  2:1196219/1‑140 (MQ=255)

  ttAAAAATTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACtg                                                                                                                                    <  1:74869/140‑1 (MQ=255)

  taaaaaaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACtg                                                                                                                                    >  2:631484/3‑140 (MQ=255)

    aaaaaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACtgtg                                                                                                                                  >  1:1011357/1‑140 (MQ=255)

    aaaaaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACtgtg                                                                                                                                  >  2:211187/1‑140 (MQ=255)

    aaaaaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACtgtg                                                                                                                                  >  1:679967/1‑140 (MQ=255)

    aaaaaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACtgtg                                                                                                                                  >  2:427454/1‑140 (MQ=255)

      aaaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCa                                                                                                                                <  2:1029738/140‑1 (MQ=255)

       aaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCAt                                                                                                                               <  2:679967/140‑1 (MQ=255)

       aaTTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCAt                                                                                                                               <  2:1087903/140‑1 (MQ=255)

               tAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTg                                                                                                                       <  1:211187/140‑1 (MQ=255)

               tAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTg                                                                                                                       <  2:616016/140‑1 (MQ=255)

               tAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTg                                                                                                                       <  2:1011357/140‑1 (MQ=255)

                 aaaaGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGAt                                                                                                                     <  2:390152/140‑1 (MQ=255)

                 aaaaGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGAt                                                                                                                     <  2:706432/140‑1 (MQ=255)

                 aaaaGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGAt                                                                                                                     <  1:523657/140‑1 (MQ=255)

                     gaagGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCtca                                                                                                                 <  1:1196219/140‑1 (MQ=255)

                      aagGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCtcat                                                                                                                >  2:375935/1‑140 (MQ=255)

                       agGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCtcatc                                                                                                               <  1:1212281/140‑1 (MQ=255)

                        ggCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCtcatca                                                                                                              <  2:440853/140‑1 (MQ=255)

                               aaaaTCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATaa                                                                                                       <  1:375935/140‑1 (MQ=255)

                               aaaaTCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATaa                                                                                                       <  2:443940/140‑1 (MQ=255)

                               aaaaTCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATaa                                                                                                       <  1:656404/140‑1 (MQ=255)

                                   tcgaatcgaCGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGt                                                                                                   >  2:22353/1‑140 (MQ=255)

                                                     cAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCAttttt                                                                                 <  2:889775/140‑1 (MQ=255)

                                                      agatgtAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCAtttttt                                                                                >  2:72405/4‑140 (MQ=255)

                                                       ggTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTa                                                                               <  2:216277/140‑1 (MQ=255)

                                                       ggTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTa                                                                               >  1:18809/1‑140 (MQ=255)

                                                        gtgtAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTaa                                                                              >  1:683128/1‑140 (MQ=255)

                                                          gtAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACg                                                                            <  2:18809/140‑1 (MQ=255)

                                                            aGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACgca                                                                          <  1:349939/140‑1 (MQ=255)

                                                                 acaTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATc                                                                     <  1:23267/140‑1 (MQ=255)

                                                                  caTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATcc                                                                    >  2:654616/1‑140 (MQ=255)

                                                                   aTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACgca                                                                          <  2:1191703/133‑1 (MQ=255)

                                                                   aTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACgca                                                                          >  1:1191703/1‑133 (MQ=255)

                                                                   aTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCt                                                                   >  1:421658/1‑140 (MQ=255)

                                                                   aTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCt                                                                   >  1:588132/1‑140 (MQ=255)

                                                                   aTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCt                                                                   >  1:1234315/1‑140 (MQ=255)

                                                                   aTTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCt                                                                   >  1:1053358/1‑140 (MQ=255)

                                                                     tGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTgg                                                                 >  1:571589/1‑140 (MQ=255)

                                                                      gATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGt                                                                <  1:72405/140‑1 (MQ=255)

                                                                        ttAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCa                                                              <  2:632908/140‑1 (MQ=255)

                                                                            cgcCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACgca                                                                          >  1:450676/1‑124 (MQ=255)

                                                                            cgcCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACgca                                                                          <  2:450676/124‑1 (MQ=255)

                                                                            cgcCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATccc                                                          <  2:683128/140‑1 (MQ=255)

                                                                             gcCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCt                                                         <  1:104366/140‑1 (MQ=255)

                                                                                  gATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTCTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCCTCCCTCAGct                                                    <  2:593812/140‑1 (MQ=255)

                                                                                         cccTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTg                                             >  1:98263/1‑140 (MQ=255)

                                                                                         cccTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTg                                             >  2:196106/1‑140 (MQ=255)

                                                                                            tGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCt                                                         <  1:78421/125‑1 (MQ=255)

                                                                                            tGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCt                                                         >  2:78421/1‑125 (MQ=255)

                                                                                                ttGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATAttt                                      <  2:98263/140‑1 (MQ=255)

                                                                                                 tGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATAtttt                                     >  1:309467/1‑140 (MQ=255)

                                                                                                  gCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTc                                    >  2:961158/1‑140 (MQ=255)

                                                                                                      ttCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCa                                <  1:163115/140‑1 (MQ=255)

                                                                                                                cGTGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCAt                      >  2:936532/1‑140 (MQ=255)

                                                                                                                cGTGATAGCTCTTGCCTTAAGTGGAGACTGTACATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCAt                      >  1:485548/1‑140 (MQ=255)

                                                                                                                  tGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCAttt                    <  2:909841/140‑1 (MQ=255)

                                                                                                                  tGATAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCAttt                    <  1:196106/140‑1 (MQ=255)

                                                                                                                     tAGCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTg                 <  2:309467/140‑1 (MQ=255)

                                                                                                                       gCTCTTGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGta               <  1:654616/140‑1 (MQ=255)

                                                                                                                           ttGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGtaataa           <  1:427454/140‑1 (MQ=255)

                                                                                                                            tGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAAc          >  1:892119/1‑140 (MQ=255)

                                                                                                                            tGCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAAc          <  1:936532/140‑1 (MQ=255)

                                                                                                                             gCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAAcc         >  1:1164567/1‑140 (MQ=255)

                                                                                                                             gCCTTAAGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAAcc         >  2:996625/1‑140 (MQ=255)

                                                                                                                                   aGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAAccc        <  1:1136551/135‑1 (MQ=255)

                                                                                                                                   aGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAAccc        >  2:1136551/1‑135 (MQ=255)

                                                                                                                                   aGTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAACCCGTAtt   <  1:22353/140‑1 (MQ=255)

                                                                                                                                    gTGGAGACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAACCCGTATTg  <  2:1164567/140‑1 (MQ=255)

                                                                                                                                    gTGGAGACTGTACATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAACCCGTATTg  <  2:485548/140‑1 (MQ=255)

GGTTAAAAATTGATTTAAAAAGAAGGCTAAGAAAATCGAATCGACGTTATTGCCAGGTGTAGATCACATTGATTAGCGCCTCGATCGTTCCCTGGCTTGCGTTTCCATTCACCGTGATAGCTCTTGCCTTAAGTGGAAACTGTGCATTACGAGTGATCTCATCAACAATAACCGTTTTGCTATCGCCATTTTTTAACGCAGCATCCTGGTCATCCCTCAGCTCTATCTGAATATTTTCGGCAGTACCTTCATTTTTGTAATAACCCGTATTG  >  NC_000913/1587747‑1588018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A