Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,783,669 T→C I231I (ATT→ATC)  fadK → short chain acyl‑CoA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,783,6690TC100.0% 262.3 / NA 73I231I (ATT→ATC) fadKshort chain acyl‑CoA synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/40);  total (33/40)

TCATTAAGTCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATTCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGGCGCTCGCAGCG  >  NC_000913/1783532‑1783805
                                                                                                                                         |                                                                                                                                        
tcATTAAGTCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATcct                                                                                                                                        >  1:1244266/1‑140 (MQ=255)
tcATTAAGTCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCAT‑ACAATATcctc                                                                                                                                       >  1:845314/1‑140 (MQ=255)
   ttAAGTCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGc                                                                                                                                     <  1:1228149/140‑1 (MQ=255)
       gTCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGt                                                                                                                                 >  1:1236376/1‑140 (MQ=255)
        tCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAg                                                                                                                                  <  1:548613/138‑1 (MQ=255)
        tCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAg                                                                                                                                  >  2:548613/1‑138 (MQ=255)
          aGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGGATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAg                                                                                                                              >  1:951751/1‑140 (MQ=255)
          aGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAg                                                                                                                              >  2:596596/1‑140 (MQ=255)
          aGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAg                                                                                                                              <  1:510378/140‑1 (MQ=255)
          aGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAg                                                                                                                              <  1:577074/140‑1 (MQ=255)
          aGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAg                                                                                                                              >  1:632889/1‑140 (MQ=255)
          aGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAg                                                                                                                              <  2:483981/140‑1 (MQ=255)
            aTTATCGCCGACAATACCTCACTGCCCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCg                                                                                                                            >  1:395703/1‑140 (MQ=255)
                 cGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCtt                                                                                                                       >  1:7217/1‑140 (MQ=255)
                          tACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTgcgcgc                                                                                                              >  1:302414/1‑140 (MQ=255)
                             cTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGAc                                                                                                           >  1:915924/1‑140 (MQ=255)
                             cTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGAc                                                                                                           >  1:915925/1‑140 (MQ=255)
                             cTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGAc                                                                                                           <  1:1039911/140‑1 (MQ=255)
                              tCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACt                                                                                                          >  1:1027744/1‑140 (MQ=255)
                                     ccACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTgcgcg                                                                                                               >  2:235681/1‑128 (MQ=255)
                                     ccACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTgcgcg                                                                                                               <  1:235681/128‑1 (MQ=255)
                                      cACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGa                                                                                                  >  2:11450/1‑140 (MQ=255)
                                      cACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGa                                                                                                  >  1:292722/1‑140 (MQ=255)
                                      cACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGa                                                                                                  >  1:1148299/1‑140 (MQ=255)
                                        cGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGAcc                                                                                                >  2:501537/1‑140 (MQ=255)
                                            gATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGc                                                                                            <  2:631059/140‑1 (MQ=255)
                                               aaCGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAgg                                                                                         <  1:410971/140‑1 (MQ=255)
                                                aCGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        <  1:501537/140‑1 (MQ=255)
                                                aCGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        <  2:7217/140‑1 (MQ=255)
                                                aCGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        <  1:976294/140‑1 (MQ=255)
                                                aCGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        <  1:724922/140‑1 (MQ=255)
                                                    cccACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTc                                                                                    <  2:456748/140‑1 (MQ=255)
                                                    cccACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTc                                                                                    <  2:1013616/140‑1 (MQ=255)
                                                    cccACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTc                                                                                    <  1:596596/140‑1 (MQ=255)
                                                     ccACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        <  2:817082/135‑1 (MQ=255)
                                                     ccACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        >  1:817082/1‑135 (MQ=255)
                                                     ccACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCt                                                                                   >  1:149345/1‑140 (MQ=255)
                                                       aCGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCttt                                                                                 >  1:1141159/1‑140 (MQ=255)
                                                       aCGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCttt                                                                                 >  2:207230/1‑140 (MQ=255)
                                                         ggCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        >  1:1025771/1‑131 (MQ=255)
                                                         ggCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGa                                                                                        <  2:1025771/131‑1 (MQ=255)
                                                         ggCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTat                                                                               >  1:763194/1‑140 (MQ=255)
                                                            gATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTatgat                                                                            <  2:1075794/140‑1 (MQ=255)
                                                             aTGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTatgatg                                                                           <  2:763194/140‑1 (MQ=255)
                                                                 aTTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTg                                                                       <  1:1062678/140‑1 (MQ=255)
                                                                       tGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCAc                                                                 <  2:1027744/140‑1 (MQ=255)
                                                                          ggTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTgc                                                                      >  1:200855/1‑132 (MQ=255)
                                                                          ggTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTgc                                                                      <  2:200855/132‑1 (MQ=255)
                                                                          ggTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTg                                                              >  1:530907/1‑140 (MQ=255)
                                                                            tGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGt                                                            <  1:865954/140‑1 (MQ=255)
                                                                            tGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGt                                                            <  2:530907/140‑1 (MQ=255)
                                                                             gCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTc                                                           >  1:469017/1‑140 (MQ=255)
                                                                                     ccTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACg                                                   >  2:853321/1‑140 (MQ=255)
                                                                                     ccTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACg                                                   <  2:951751/140‑1 (MQ=255)
                                                                                      cTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTACTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACgg                                                  <  2:1141159/140‑1 (MQ=255)
                                                                                        ccGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGc                                                >  1:321140/1‑140 (MQ=255)
                                                                                               cGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGc                                         <  2:1148299/140‑1 (MQ=255)
                                                                                               cGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGc                                         <  2:292722/140‑1 (MQ=255)
                                                                                                gAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCa                                        <  2:302414/140‑1 (MQ=255)
                                                                                                gAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCa                                        >  1:825623/1‑140 (MQ=255)
                                                                                                 aGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCAt                                       >  2:1203151/1‑140 (MQ=255)
                                                                                                        gCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTaa                                >  1:810785/1‑140 (MQ=255)
                                                                                                        gCCAAAGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTaa                                <  2:1236376/140‑1 (MQ=255)
                                                                                                           aaaGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACgg                             <  1:484347/140‑1 (MQ=255)
                                                                                                             aGGGCGTGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCa                           <  2:588786/140‑1 (MQ=255)
                                                                                                                   tGATGCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTc                     >  2:595182/1‑140 (MQ=255)
                                                                                                                       gCTAACGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTaa                 <  2:321140/140‑1 (MQ=255)
                                                                                                                         tcaCGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGCTGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAAtt               >  2:15061/3‑140 (MQ=255)
                                                                                                                          aaCGCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTg              >  2:1034508/1‑140 (MQ=255)
                                                                                                                             gCATAACAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGgcg           <  1:595182/140‑1 (MQ=255)
                                                                                                                                  aCAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGGCGCTCGc      <  1:207230/140‑1 (MQ=255)
                                                                                                                                   cAATATCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGGCGCTCGCa     <  2:632889/140‑1 (MQ=255)
                                                                                                                                     atatCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGGCGCTCGCAGc   <  1:853321/140‑1 (MQ=255)
                                                                                                                                      tatCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGGCGCTCGCAGCg  <  2:1244266/140‑1 (MQ=255)
                                                                                                                                      tatCCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGGCGCTCGCAGCg  <  2:825623/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TCATTAAGTCAGATTATCGCCGACAATACCTCACTGACCACGGCGATAACGACCCACGGCGATGAATTAGCTGCGGTGCTGTTTACCTCCGGAACCGAGGGTCTGCCAAAGGGCGTGATGCTAACGCATAACAATATTCTCGCCAGTGAGCGGGCTTATTGCGCGCGACTGAATCTGACCTGGCAGGATGTCTTTATGATGCCTGCGCCACTTGGTCACGCAACGGGCTTTCTGCATGGCGTAACGGCACCATTCTTAATTGGCGCTCGCAGCG  >  NC_000913/1783532‑1783805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A