Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,863,290	A→G	T174A (ACC→GCC)	gapA →	glyceraldehyde‑3‑phosphate dehydrogenase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,863,290	0	A	G	100.0%	243.7 / NA	69	T174A (ACC→GCC)	gapA	glyceraldehyde‑3‑phosphate dehydrogenase A
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (26/43); total (26/43)

GATGTTCGTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGACCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGCTGTAGGTAAAG  >  NC_000913/1863154‑1863422

gATGTTCGTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGgcca                                                                                                                                   >  1:496126/1‑140 (MQ=255)

gATGTTCGTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGgcca                                                                                                                                   <  1:54898/140‑1 (MQ=255)

     tCGTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGtt                                                                                                                              >  1:410663/1‑140 (MQ=255)

     tCGTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGtt                                                                                                                              <  2:552132/140‑1 (MQ=255)

     tCGTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGtt                                                                                                                              <  1:1255789/140‑1 (MQ=255)

       gTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCCTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCa                                                                                                                            <  1:1143248/140‑1 (MQ=255)

        ttAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCAc                                                                                                                           <  1:967846/140‑1 (MQ=255)

           aaGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGct                                                                                                                        >  2:474213/1‑140 (MQ=255)

                gcTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCtactac                                                                                                                   <  1:265533/140‑1 (MQ=255)

                gcTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCtactac                                                                                                                   <  1:1143796/140‑1 (MQ=255)

                 cTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCGCGCTACTAcc                                                                                                                  >  1:388497/1‑140 (MQ=255)

                 cTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTAcc                                                                                                                  >  2:386715/1‑140 (MQ=255)

                  tAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCg                                                                                                                 >  2:1190991/1‑140 (MQ=255)

                     cTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTa                                                                                                              <  2:528882/140‑1 (MQ=255)

                       tCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACt                                                                                                            <  1:307083/140‑1 (MQ=255)

                        cGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTc                                                                                                           >  2:1133309/1‑140 (MQ=255)

                               tatGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAAc                                                                                                    >  1:487389/1‑140 (MQ=255)

                               tatGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAAc                                                                                                    <  1:888233/140‑1 (MQ=255)

                                     ggCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGa                                                                                              >  1:395105/1‑140 (MQ=255)

                                       ccAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAAc                                                                                                    >  2:518699/1‑132 (MQ=255)

                                       ccAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAAc                                                                                                    <  1:518699/132‑1 (MQ=255)

                                         aGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGc                                                                                          <  1:441304/140‑1 (MQ=255)

                                         aGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGc                                                                                          <  1:386715/140‑1 (MQ=255)

                                         aGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGc                                                                                          <  1:275401/140‑1 (MQ=255)

                                         aGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACAGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGc                                                                                          <  1:439049/140‑1 (MQ=255)

                                          ggACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGcc                                                                                         <  2:1038492/140‑1 (MQ=255)

                                          ggACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGcc                                                                                         <  2:596320/140‑1 (MQ=255)

                                             cATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGt                                                                                      <  2:395105/140‑1 (MQ=255)

                                                cGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGTTACTACCGCTACTCAGAAAACCGTTGATGGCCCGtctc                                                                                   >  1:907927/1‑140 (MQ=255)

                                                cGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGtctc                                                                                   >  2:1138166/1‑140 (MQ=255)

                                                cGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGCCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGtctc                                                                                   >  1:3119/1‑140 (MQ=255)

                                                       aaCGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGa                                                                            >  2:158870/1‑140 (MQ=255)

                                                              ccTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGgcgc                                                                     >  2:79402/1‑140 (MQ=255)

                                                                       ccaACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCcgc                                                            >  1:279710/1‑140 (MQ=255)

                                                                        caACTGCCTGGCTCCGCTGGCTAAAGGTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCcgcg                                                           >  2:970952/1‑140 (MQ=255)

                                                                           cTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCgcggcg                                                        <  1:786628/140‑1 (MQ=255)

                                                                           cTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCgcggcg                                                        <  1:374383/140‑1 (MQ=255)

                                                                           cTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCgcggcg                                                        <  2:1199155/140‑1 (MQ=255)

                                                                           cTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCgcggcg                                                        <  1:642921/140‑1 (MQ=255)

                                                                            tGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGgcgc                                                       >  2:336231/1‑140 (MQ=255)

                                                                              ccTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCtt                                                     >  2:886259/1‑140 (MQ=255)

                                                                               cTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTc                                                    >  2:356319/1‑140 (MQ=255)

                                                                                  gCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCa                                                 <  1:999618/140‑1 (MQ=255)

                                                                                  gCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCa                                                 <  2:487389/140‑1 (MQ=255)

                                                                                  gCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCa                                                 <  2:604373/140‑1 (MQ=255)

                                                                                  gCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCa                                                 <  1:752056/140‑1 (MQ=255)

                                                                                      cGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCgcggcg                                                        <  1:297742/129‑1 (MQ=255)

                                                                                      cGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCgcggcg                                                        >  2:297742/1‑129 (MQ=255)

                                                                                            cTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACatcatc                                       <  1:1030911/140‑1 (MQ=255)

                                                                                              aaaGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATccc                                     <  2:496126/140‑1 (MQ=255)

                                                                                               aaGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCg                                    <  1:886259/140‑1 (MQ=255)

                                                                                               aaGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCg                                    <  2:218940/140‑1 (MQ=255)

                                                                                               aaGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCg                                    <  1:356319/140‑1 (MQ=255)

                                                                                                     tCAACGATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCctct                              >  1:572670/1‑140 (MQ=255)

                                                                                                          gATAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCgg                         >  2:143437/1‑140 (MQ=255)

                                                                                                           aTAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGt                        <  2:410663/140‑1 (MQ=255)

                                                                                                           aTAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGt                        <  2:572670/140‑1 (MQ=255)

                                                                                                           aTAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGt                        >  1:413047/1‑140 (MQ=255)

                                                                                                            tAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCGCGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGtg                       <  2:388497/140‑1 (MQ=255)

                                                                                                            tAACTTCGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGtg                       >  2:301008/1‑140 (MQ=255)

                                                                                                                  cGGCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTa                 <  1:474213/140‑1 (MQ=255)

                                                                                                                    gCATCATCGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGTCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTaaa               >  1:905624/1‑140 (MQ=255)

                                                                                                                      atcatcGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGc             <  1:1190991/140‑1 (MQ=255)

                                                                                                                      atcatcGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGc             <  2:1051266/140‑1 (MQ=255)

                                                                                                                      atcatcGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGc             <  2:147197/140‑1 (MQ=255)

                                                                                                                       tcatcGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGCt            <  2:279710/140‑1 (MQ=255)

                                                                                                                        catcGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTATCGGTGCTGCTAAAGCTg           <  1:79402/140‑1 (MQ=255)

                                                                                                                         atcGAAGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGCTGt          <  2:413047/140‑1 (MQ=255)

                                                                                                                         atcGAAGGCCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGCTGt          <  2:3119/140‑1 (MQ=255)

                                                                                                                              aGGTCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGCTGTAGGTa     <  1:301008/140‑1 (MQ=255)

                                                                                                                                 tCTGATGGCCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGCTGTAGGTAAAg  >  1:763373/1‑140 (MQ=255)

GATGTTCGTTAAAGGCGCTAACTTCGACAAATATGCTGGCCAGGACATCGTTTCCAACGCTTCCTGCACCACCAACTGCCTGGCTCCGCTGGCTAAAGTTATCAACGATAACTTCGGCATCATCGAAGGTCTGATGACCACCGTTCACGCTACTACCGCTACTCAGAAAACCGTTGATGGCCCGTCTCACAAAGACTGGCGCGGCGGCCGCGGCGCTTCCCAGAACATCATCCCGTCCTCTACCGGTGCTGCTAAAGCTGTAGGTAAAG  >  NC_000913/1863154‑1863422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A