Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,928,983	T→C	intergenic (‑144/+65)	ptrB ← / ← yebE	oligopeptidase B/conserved inner membrane protein YebE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,928,983	0	T	C	100.0%	264.5 / NA	73	intergenic (‑144/+65)	ptrB/yebE	oligopeptidase B/conserved inner membrane protein YebE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/33); total (40/33)

TTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTT  >  NC_000913/1928851‑1929118

ttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATg                                                                                                                                  >  2:845652/1‑140 (MQ=255)

ttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATg                                                                                                                                  <  2:1169836/140‑1 (MQ=255)

 tctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATgg                                                                                                                                 <  1:845652/140‑1 (MQ=255)

 tctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATgg                                                                                                                                 >  1:368451/1‑140 (MQ=255)

 tctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATgg                                                                                                                                 <  2:660711/140‑1 (MQ=255)

   tGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCt                                                                                                                               >  2:264566/1‑140 (MQ=255)

      ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCtgtg                                                                                                                            <  2:976493/140‑1 (MQ=255)

      ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCtgtg                                                                                                                            <  2:97537/140‑1 (MQ=255)

      ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCtgtg                                                                                                                            <  2:1099784/140‑1 (MQ=255)

         aaaCATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCtgtg                                                                                                                            >  2:1211322/1‑137 (MQ=255)

         aaaCATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCtgtg                                                                                                                            <  1:1211322/137‑1 (MQ=255)

            cATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTc                                                                                                                      <  2:704063/140‑1 (MQ=255)

               cTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTgg                                                                                                                   >  2:237245/1‑140 (MQ=255)

               cTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTgg                                                                                                                   >  2:493543/1‑140 (MQ=255)

                ttATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGa                                                                                                                  <  1:264566/140‑1 (MQ=255)

                         tGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGaa                                                                                                         >  2:239230/1‑140 (MQ=255)

                         tGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGaa                                                                                                         >  1:476347/1‑140 (MQ=255)

                         tGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGaa                                                                                                         >  2:695654/1‑140 (MQ=255)

                          ggCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa                                                                                                        >  1:914854/1‑140 (MQ=255)

                          ggCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa                                                                                                        >  1:7894/1‑140 (MQ=255)

                          ggCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGATGTGCGATTCTGGATAGCCCGaaa                                                                                                        >  2:902576/1‑140 (MQ=255)

                           gCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAAt                                                                                                       >  2:658633/1‑140 (MQ=255)

                           gCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAAt                                                                                                       >  1:1059469/1‑140 (MQ=255)

                           gCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAAt                                                                                                       >  2:1139144/1‑140 (MQ=255)

                           gCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAAt                                                                                                       >  1:859150/1‑140 (MQ=255)

                              aaaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGt                                                                                                    <  1:239230/140‑1 (MQ=255)

                              aaaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGt                                                                                                    <  1:237245/140‑1 (MQ=255)

                              aaaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGt                                                                                                    <  2:778044/140‑1 (MQ=255)

                              aaaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGATGTGCGATTCTGGATAGCCCGAAATAGt                                                                                                    <  1:902576/140‑1 (MQ=255)

                                 cTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCaa                                                                                                 >  1:148694/1‑140 (MQ=255)

                                   cACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACt                                                                                               <  2:1059469/140‑1 (MQ=255)

                                     ccGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTc                                                                                             >  1:119827/1‑140 (MQ=255)

                                       ggggATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg                                                                                           <  2:119827/140‑1 (MQ=255)

                                       ggggATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg                                                                                           <  2:148694/140‑1 (MQ=255)

                                       ggggATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg                                                                                           <  1:1034562/140‑1 (MQ=255)

                                        gggATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACATAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAgg                                                                                          <  2:423160/140‑1 (MQ=255)

                                        gggATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAgg                                                                                          <  2:660193/140‑1 (MQ=255)

                                        gggATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAgg                                                                                          <  2:454708/140‑1 (MQ=255)

                                                 gCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCaga                                                                                 >  1:1197902/1‑140 (MQ=255)

                                                    aaaCAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCagagag                                                                              >  2:357189/1‑140 (MQ=255)

                                                               tCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTc                                                                   >  1:1160541/1‑140 (MQ=255)

                                                               tCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTc                                                                   >  1:1049178/1‑140 (MQ=255)

                                                                  ttGCTTAGATGATGACAGGTAATGGCGCGGATATCAAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGc                                                                >  1:236103/1‑140 (MQ=255)

                                                                    gCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCa                                                              <  2:476347/140‑1 (MQ=255)

                                                                    gCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCa                                                              >  2:289353/1‑140 (MQ=255)

                                                                       tAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAg                                                           >  2:1048277/1‑140 (MQ=255)

                                                                         gatgatGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTg                                                         >  1:184133/1‑140 (MQ=255)

                                                                           tgatgaCAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCg                                                       <  2:1049178/140‑1 (MQ=255)

                                                                            gatgaCAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGt                                                      >  1:1023695/1‑140 (MQ=255)

                                                                             atgaCAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGtt                                                     >  1:110553/1‑140 (MQ=255)

                                                                               gaCAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGtttt                                                   >  2:710273/1‑140 (MQ=255)

                                                                                 cAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTg                                                 <  1:1139144/140‑1 (MQ=255)

                                                                                 cAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTg                                                 <  1:289353/140‑1 (MQ=255)

                                                                                     tAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGt                                             <  1:493543/140‑1 (MQ=255)

                                                                                             cgGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCgag                                        >  2:802259/1‑137 (MQ=255)

                                                                                             cgGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCgag                                        <  1:802259/137‑1 (MQ=255)

                                                                                             cgGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATc                                     <  2:7894/140‑1 (MQ=255)

                                                                                              ggATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATcg                                    >  1:53871/1‑140 (MQ=255)

                                                                                              ggATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATcg                                    >  2:925132/1‑140 (MQ=255)

                                                                                                  atCGAATGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGtt                                <  2:605545/140‑1 (MQ=255)

                                                                                                       aTGTTATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATg                           <  2:989246/140‑1 (MQ=255)

                                                                                                          ttATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCg                        >  2:177904/1‑140 (MQ=255)

                                                                                                           tATGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGt                       <  1:367016/140‑1 (MQ=255)

                                                                                                            aTGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTACCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTc                      >  2:880750/1‑140 (MQ=255)

                                                                                                             tGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCa                     >  1:337348/1‑140 (MQ=255)

                                                                                                             tGCAGACAGAGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCa                     >  2:1163214/1‑140 (MQ=255)

                                                                                                                 gacagaGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGaa                 <  1:428444/140‑1 (MQ=255)

                                                                                                                 gacagaGAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGaa                 <  2:859150/140‑1 (MQ=255)

                                                                                                                    agagAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACAt              >  1:174672/1‑140 (MQ=255)

                                                                                                                    agagAAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACAt              >  1:1094922/1‑140 (MQ=255)

                                                                                                                     gagaAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATc             <  1:925132/140‑1 (MQ=255)

                                                                                                                      agaAAATCAGCCTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATcc            >  1:708551/1‑140 (MQ=255)

                                                                                                                                ccTGCTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGAttt  >  2:794612/1‑140 (MQ=255)

TTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTT  >  NC_000913/1928851‑1929118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A