Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,958,713	T→C	H185R (CAC→CGC)	cutC ←	protein CutC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,958,713	0	T	C	100.0%	367.2 / NA	105	H185R (CAC→CGC)	cutC	protein CutC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (56/49); total (56/49)

Only 100 of 105 total aligned reads displayed.

ATAACGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGTGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCC  >  NC_000913/1958583‑1958847

ataACGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGtttt                                                                                                                               <  1:1052610/140‑1 (MQ=255)

  aaCGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCt                                                                                                                             >  2:641214/1‑140 (MQ=255)

  aaCGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCt                                                                                                                             >  1:99373/1‑140 (MQ=255)

  aaCGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCt                                                                                                                             >  1:724729/1‑140 (MQ=255)

    cgcgAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGc                                                                                                                           >  1:930690/1‑140 (MQ=255)

      cgAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCt                                                                                                                             >  1:700891/1‑136 (MQ=255)

      cgAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCAc                                                                                                                         >  1:176288/1‑140 (MQ=255)

       gAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACg                                                                                                                        <  2:738397/140‑1 (MQ=255)

       gAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACg                                                                                                                        <  1:830680/140‑1 (MQ=255)

       gAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACg                                                                                                                        <  1:166750/140‑1 (MQ=255)

             tCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTcc                                                                                                                  >  1:969777/1‑140 (MQ=255)

                  cgcgTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTc                                                                                                             <  1:604239/140‑1 (MQ=255)

                  cgcgTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTc                                                                                                             <  1:1148739/140‑1 (MQ=255)

                       gtTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGcc                                                                                                        <  1:493570/140‑1 (MQ=255)

                       gtTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGcc                                                                                                        <  1:207572/140‑1 (MQ=255)

                       gtTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGcc                                                                                                        <  2:899387/140‑1 (MQ=255)

                          cATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATa                                                                                                     <  2:635243/140‑1 (MQ=255)

                          cATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATa                                                                                                     <  2:930690/140‑1 (MQ=255)

                               gatgaCATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGAt                                                                                                >  1:814241/1‑140 (MQ=255)

                                 tgaCATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTg                                                                                              <  1:576705/140‑1 (MQ=255)

                                 tgaCATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTg                                                                                              <  2:99373/140‑1 (MQ=255)

                                     aTGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGc                                                                                          >  1:473966/1‑140 (MQ=255)

                                     aTGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGc                                                                                          >  1:921765/1‑140 (MQ=255)

                                     aTGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGc                                                                                          >  2:783425/1‑140 (MQ=255)

                                     aTGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGc                                                                                          >  1:679106/1‑140 (MQ=255)

                                       ggACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCAt                                                                                        >  2:762527/1‑140 (MQ=255)

                                       ggACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCAt                                                                                        >  1:619130/1‑140 (MQ=255)

                                       ggACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCAt                                                                                        >  1:589669/1‑140 (MQ=255)

                                          cAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCAc                                                                                     >  1:700664/1‑140 (MQ=255)

                                           aaTCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACg                                                                                    <  2:285231/140‑1 (MQ=255)

                                             tCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGa                                                                                   <  2:99280/139‑1 (MQ=255)

                                             tCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGa                                                                                   >  1:99280/1‑139 (MQ=255)

                                             tCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGa                                                                                   <  1:967246/139‑1 (MQ=255)

                                             tCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGa                                                                                   >  2:967246/1‑139 (MQ=255)

                                             tCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGAt                                                                                  <  2:310408/140‑1 (MQ=255)

                                             tCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGAt                                                                                  >  2:891993/1‑140 (MQ=255)

                                             tCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGAt                                                                                  <  2:679106/140‑1 (MQ=255)

                                               cTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATgg                                                                                >  2:480431/1‑140 (MQ=255)

                                               cTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATgg                                                                                >  1:48296/1‑140 (MQ=255)

                                                    ttACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAAt                                                                           <  1:259052/140‑1 (MQ=255)

                                                    ttACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAAt                                                                           <  2:837072/140‑1 (MQ=255)

                                                       cGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAg                                                                        >  1:1254996/1‑140 (MQ=255)

                                                       cGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAg                                                                        >  2:1012406/1‑140 (MQ=255)

                                                       cGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAg                                                                        <  2:940287/140‑1 (MQ=255)

                                                       cGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAg                                                                        >  1:592926/1‑140 (MQ=255)

                                                        gATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGt                                                                       >  1:1032967/1‑140 (MQ=255)

                                                         aTAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGtt                                                                      >  2:92628/1‑140 (MQ=255)

                                                             cGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCAt                                                                  >  2:260626/1‑140 (MQ=255)

                                                               cATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATaa                                                                >  2:78241/1‑140 (MQ=255)

                                                                  cGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAAt                                                                           >  1:1095961/1‑126 (MQ=255)

                                                                   ggTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAAtttt                                                            >  2:437934/1‑140 (MQ=255)

                                                                    gTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAAttttt                                                           >  2:819263/1‑140 (MQ=255)

                                                                     tGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTg                                                          <  2:786615/140‑1 (MQ=255)

                                                                     tGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTg                                                          >  1:535011/1‑140 (MQ=255)

                                                                       aGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGAt                                                        <  2:700664/140‑1 (MQ=255)

                                                                            tGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAAcc                                                   >  1:1254777/1‑140 (MQ=255)

                                                                             gCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATaa                                                      <  2:934352/136‑1 (MQ=255)

                                                                             gCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATaa                                                      >  1:934352/1‑136 (MQ=255)

                                                                             gCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCt                                                  >  2:353143/1‑140 (MQ=255)

                                                                              ccACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCtt                                                 >  2:146256/1‑140 (MQ=255)

                                                                              ccACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCtt                                                 >  1:544042/1‑140 (MQ=255)

                                                                                   cTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGt                                            >  1:584280/1‑140 (MQ=255)

                                                                                      ccGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCg                                         >  1:1246612/1‑140 (MQ=255)

                                                                                         cgGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTGCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCt                                      >  2:1119419/1‑140 (MQ=255)

                                                                                         cgGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCt                                      <  2:363835/140‑1 (MQ=255)

                                                                                              cTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGAttt                                 >  2:1070200/1‑140 (MQ=255)

                                                                                              cTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGAttt                                 <  1:1070200/140‑1 (MQ=255)

                                                                                                aTGGACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGAttttt                               >  1:396698/1‑140 (MQ=255)

                                                                                                   gACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGcc                            <  1:353143/140‑1 (MQ=255)

                                                                                                   gACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGcc                            <  1:437934/140‑1 (MQ=255)

                                                                                                   gACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGcc                            <  1:504157/140‑1 (MQ=255)

                                                                                                   gACTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGcc                            <  1:1057841/140‑1 (MQ=255)

                                                                                                     cTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCt                          <  2:535011/140‑1 (MQ=255)

                                                                                                     cTTCCAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCt                          >  2:752200/1‑140 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGcc                            >  2:192582/1‑135 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGcc                            <  1:192582/135‑1 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCt                          <  1:977853/137‑1 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCt                          >  2:977853/1‑137 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTg                         <  1:1157004/138‑1 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTg                         >  2:1157004/1‑138 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGAt                       >  1:1116572/1‑140 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGAt                       >  2:975319/1‑140 (MQ=255)

                                                                                                        ccAGCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGAt                       <  1:480431/140‑1 (MQ=255)

                                                                                                           gCACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTc                    <  1:641214/140‑1 (MQ=255)

                                                                                                            cACTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCa                   <  1:783425/140‑1 (MQ=255)

                                                                                                             aCTCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAg                  <  1:146256/140‑1 (MQ=255)

                                                                                                               tCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAg                  <  1:92028/138‑1 (MQ=255)

                                                                                                               tCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAg                  >  2:92028/1‑138 (MQ=255)

                                                                                                               tCCGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTa                >  1:686668/1‑140 (MQ=255)

                                                                                                                ccGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTAc               >  1:101302/1‑140 (MQ=255)

                                                                                                                ccGGCATCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTAc               >  1:402525/1‑140 (MQ=255)

                                                                                                                     aTCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCggg          <  1:1119419/140‑1 (MQ=255)

                                                                                                                     aTCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCggg          <  1:260626/140‑1 (MQ=255)

                                                                                                                     aTCGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCggg          <  2:103107/140‑1 (MQ=255)

                                                                                                                      tCGAGGAAGTGGCGCAGGTTTTCTGCCCGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAA‑TTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCa        <  2:176288/140‑1 (MQ=255)

                                                                                                                       cGAGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCa        <  2:619130/140‑1 (MQ=255)

                                                                                                                         aGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAg                  <  1:293440/128‑1 (MQ=255)

                                                                                                                         aGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAg                  >  2:293440/1‑128 (MQ=255)

                                                                                                                         aGGAAGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAAt      >  1:545355/1‑140 (MQ=255)

                                                                                                                             aGTGGCGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGccc  >  2:136015/1‑140 (MQ=255)

ATAACGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGACAATCCTTGATTACGATAACGCATCGGTGAGGCTTGCCACGCTCCCGCGGAGCTATGGACTTCCAGCACTCCGGCATCGAGGAAGTGGTGCAGGTTTTCTGCACGGACTCCTGCTCCGGCCATAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCC  >  NC_000913/1958583‑1958847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A