Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,073,251 G→A V571V (GTG→GTA)  flu → CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,073,2510GA100.0% 253.6 / NA 72V571V (GTG→GTA) fluCP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (35/37);  total (35/37)

TCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTGCGTGTACGC  >  NC_000913/2073115‑2073386
                                                                                                                                        |                                                                                                                                       
tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAg                                                                                                                                      >  1:377970/1‑140 (MQ=255)
 caccacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGt                                                                                                                                     <  1:782025/140‑1 (MQ=255)
 caccacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGt                                                                                                                                     <  2:632006/140‑1 (MQ=255)
 caccacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGt                                                                                                                                     <  1:137128/140‑1 (MQ=255)
  accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTc                                                                                                                                    <  2:933553/140‑1 (MQ=255)
  accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTc                                                                                                                                    >  2:1137659/1‑140 (MQ=255)
     acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCggt                                                                                                                                 >  2:1034907/1‑140 (MQ=255)
     acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCggt                                                                                                                                 <  2:147240/140‑1 (MQ=255)
     acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCggt                                                                                                                                 >  1:229084/1‑140 (MQ=255)
      cGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCggtg                                                                                                                                >  1:196093/1‑140 (MQ=255)
       ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCggtgg                                                                                                                               >  2:1143699/1‑140 (MQ=255)
         aTGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGgtggtg                                                                                                                             >  2:171707/1‑140 (MQ=255)
          tGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGtggtgg                                                                                                                            <  1:506967/140‑1 (MQ=255)
           gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGa                                                                                                                           <  2:332311/140‑1 (MQ=255)
           gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGa                                                                                                                           <  1:1175298/140‑1 (MQ=255)
           gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGa                                                                                                                           <  1:1137659/140‑1 (MQ=255)
           gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGa                                                                                                                           >  2:99788/1‑140 (MQ=255)
           gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGATACAGTCGGTGGTGGa                                                                                                                           <  2:1055527/140‑1 (MQ=255)
            tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGAt                                                                                                                          >  1:1212747/1‑140 (MQ=255)
                    cAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAg                                                                                                                  <  1:597729/140‑1 (MQ=255)
                     aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCggtg                                                                                                                                <  1:977552/125‑1 (MQ=255)
                     aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCggtg                                                                                                                                >  2:977552/1‑125 (MQ=255)
                       cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAg                                                                                                                  >  2:837677/1‑137 (MQ=255)
                       cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAg                                                                                                                  <  1:837677/137‑1 (MQ=255)
                       cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCa                                                                                                               >  1:733664/1‑140 (MQ=255)
                       cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCa                                                                                                               >  2:1016724/1‑140 (MQ=255)
                              cAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGa                                                                                                        <  1:110080/140‑1 (MQ=255)
                               aGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGCCCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGAc                                                                                                       <  2:229084/140‑1 (MQ=255)
                                 cccTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGAc                                                                                                       >  1:139034/1‑138 (MQ=255)
                                 cccTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGAc                                                                                                       <  2:139034/138‑1 (MQ=255)
                                     gAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTc                                                                                                 <  1:99788/140‑1 (MQ=255)
                                      aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAg                                                                                                                  >  2:248412/1‑122 (MQ=255)
                                      aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAg                                                                                                                  <  1:248412/122‑1 (MQ=255)
                                      aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCa                                                                                                >  1:1199112/1‑140 (MQ=255)
                                           gACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCa                                                                                           >  1:938354/1‑140 (MQ=255)
                                           gACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCa                                                                                           >  1:996721/1‑140 (MQ=255)
                                             ccGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc                                                                                         <  1:1016724/140‑1 (MQ=255)
                                             ccGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc                                                                                         <  2:779485/140‑1 (MQ=255)
                                             ccGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc                                                                                         <  2:118248/140‑1 (MQ=255)
                                                    caCTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAccc                                                                                  <  2:309489/140‑1 (MQ=255)
                                                        gtgCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGcac                                                                              >  2:755786/1‑140 (MQ=255)
                                                           cTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAgg                                                                           <  1:340837/140‑1 (MQ=255)
                                                           cTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAgg                                                                           <  2:377970/140‑1 (MQ=255)
                                                           cTGAACGGTG‑CATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAggg                                                                          <  2:1178469/140‑1 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCATCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCg                                                                   >  1:669678/1‑140 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc                                                                                    >  2:48375/1‑123 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc                                                                                    <  1:48375/123‑1 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCg                                                                   >  1:1113729/1‑140 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCg                                                                   >  2:109308/1‑140 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCg                                                                   >  2:1065156/1‑140 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCg                                                                   <  1:519972/140‑1 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCg                                                                   >  1:457171/1‑140 (MQ=255)
                                                                   tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCg                                                                   >  2:519972/1‑140 (MQ=255)
                                                                         tGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCgg                                                             <  2:938354/140‑1 (MQ=255)
                                                                          gACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGc                                                            <  2:196093/140‑1 (MQ=255)
                                                                                     tGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGaa                                                   >  1:303835/1‑138 (MQ=255)
                                                                                     tGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGaa                                                   <  2:303835/138‑1 (MQ=255)
                                                                                       tCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTg                                               >  1:744857/1‑140 (MQ=255)
                                                                                       tCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGACAACCCTGAAAggg                                               >  2:1233056/1‑138 (MQ=255)
                                                                                              cGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAAcc                                        >  2:220570/1‑140 (MQ=255)
                                                                                                  tCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCCCCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGaa                                    <  1:171707/140‑1 (MQ=255)
                                                                                                             cTGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATg                         <  1:260366/140‑1 (MQ=255)
                                                                                                              tGGAATATCCCCGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATgg                        <  2:251408/140‑1 (MQ=255)
                                                                                                                      ccccGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCa                >  2:633116/1‑140 (MQ=255)
                                                                                                                      ccccGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCa                >  1:808606/1‑140 (MQ=255)
                                                                                                                       cccGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAg               >  2:248014/1‑140 (MQ=255)
                                                                                                                       cccGATAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAg               >  2:220085/1‑140 (MQ=255)
                                                                                                                           aTAACGCCACGGTACAGTCGGTGGTGGATGACCTCAACCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTg           >  1:469778/1‑140 (MQ=255)
                                                                                                                            tAACGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTGc          >  2:476310/1‑140 (MQ=255)
                                                                                                                               cGCCACGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTGCgtg       <  2:457171/140‑1 (MQ=255)
                                                                                                                                   aCGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTGCGTGTACg   <  2:996721/140‑1 (MQ=255)
                                                                                                                                   aCGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTGCGTGTACg   <  1:476310/140‑1 (MQ=255)
                                                                                                                                    cGGTACAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTGCGTGTACGc  <  2:728089/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGAATGGCACCATCAGCCTGCGTGTACGC  >  NC_000913/2073115‑2073386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A