Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,736,648	T→C	V168A (GTA→GCA)	bamD →	outer membrane protein assembly factor BamD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,736,648	0	T	C	100.0%	436.2 / NA	120	V168A (GTA→GCA)	bamD	outer membrane protein assembly factor BamD
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (49/71); total (49/71)

Only 100 of 120 total aligned reads displayed.

TGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTG  >  NC_000913/2736511‑2736782

tGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCAt                                                                                                                                      >  2:237149/1‑140 (MQ=255)

tGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCAt                                                                                                                                      >  1:386381/1‑140 (MQ=255)

tGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCAt                                                                                                                                      >  1:923510/1‑140 (MQ=255)

  cgcTGCAAGGGTTCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTc                                                                                                                                    >  1:409763/1‑140 (MQ=255)

       cAAGGGTTCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGaa                                                                                                                               >  1:1210176/1‑140 (MQ=255)

             ttCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCAt                                                                                                                                      >  2:747180/1‑127 (MQ=255)

               cTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTc                                                                                                                       >  2:50157/1‑140 (MQ=255)

               cTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTc                                                                                                                       <  2:386381/140‑1 (MQ=255)

                  tGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTgg                                                                                                                    <  1:727774/140‑1 (MQ=255)

                  tGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTgg                                                                                                                    <  2:433249/140‑1 (MQ=255)

                     cGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGa                                                                                                                 <  2:882160/140‑1 (MQ=255)

                     cGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGa                                                                                                                 <  1:860591/140‑1 (MQ=255)

                     cGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGa                                                                                                                 <  1:64797/140‑1 (MQ=255)

                     cGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGa                                                                                                                 <  1:382779/140‑1 (MQ=255)

                      gTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGaa                                                                                                                >  2:280098/1‑140 (MQ=255)

                       tCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGaaa                                                                                                               <  1:784999/140‑1 (MQ=255)

                       tCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGaaa                                                                                                               <  2:36143/140‑1 (MQ=255)

                       tCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGaaa                                                                                                               <  2:1087974/140‑1 (MQ=255)

                       tCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGaaa                                                                                                               <  1:50157/140‑1 (MQ=255)

                       tCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGaaa                                                                                                               <  2:529719/140‑1 (MQ=255)

                       tCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGaaa                                                                                                               <  1:1256789/140‑1 (MQ=255)

                          aTCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAatat                                                                                                            >  2:329270/1‑140 (MQ=255)

                          aTCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGACATTCCTGAAAGATCGTCTGGCGAAatat                                                                                                            >  2:554954/1‑140 (MQ=255)

                                    tcgcgatcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCg                                                                                                  <  2:409763/140‑1 (MQ=255)

                                     cgcgatcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGt                                                                                                 >  1:395964/1‑140 (MQ=255)

                                     cgcgatcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGt                                                                                                 >  1:1102589/1‑140 (MQ=255)

                                       cgatcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTgg                                                                                               <  2:1229557/140‑1 (MQ=255)

                                       cgatcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTgg                                                                                               <  2:923510/140‑1 (MQ=255)

                                         atcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             <  2:1054958/140‑1 (MQ=255)

                                         atcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             <  2:804505/140‑1 (MQ=255)

                                         atcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             <  2:931250/140‑1 (MQ=255)

                                         atcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             <  1:1173686/140‑1 (MQ=255)

                                         atcCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             <  1:440890/140‑1 (MQ=255)

                                           ccTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGa                                                                                           <  1:480086/140‑1 (MQ=255)

                                           ccTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGa                                                                                           <  2:1210176/140‑1 (MQ=255)

                                           ccTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGa                                                                                           <  2:308075/140‑1 (MQ=255)

                                           ccTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGa                                                                                           <  1:237149/140‑1 (MQ=255)

                                           ccTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGa                                                                                           <  1:652010/140‑1 (MQ=255)

                                           ccTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGa                                                                                           <  1:783584/140‑1 (MQ=255)

                                            cTCAATATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAg                                                                                          <  1:945175/140‑1 (MQ=255)

                                             tCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGt                                                                                         <  2:1102589/140‑1 (MQ=255)

                                              cAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTa                                                                                        <  2:395964/140‑1 (MQ=255)

                                              cAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTa                                                                                        <  2:711564/140‑1 (MQ=255)

                                              cAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTa                                                                                        <  2:770173/140‑1 (MQ=255)

                                              cAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTa                                                                                        >  1:321631/1‑140 (MQ=255)

                                              cAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTa                                                                                        <  1:320318/140‑1 (MQ=255)

                                               aaCATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             >  2:471625/1‑134 (MQ=255)

                                               aaCATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTAc                                                                                       <  2:321631/140‑1 (MQ=255)

                                                    gCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATAc                                                                                  >  1:469151/1‑140 (MQ=255)

                                                     cACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             <  1:326417/128‑1 (MQ=255)

                                                     cACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             >  2:326417/1‑128 (MQ=255)

                                                      aCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGa                                                                                           >  2:1191500/1‑129 (MQ=255)

                                                      aCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAg                                                                                >  2:178419/1‑140 (MQ=255)

                                                        gAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             >  2:111190/1‑125 (MQ=255)

                                                        gAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGcc                                                                                             <  1:111190/125‑1 (MQ=255)

                                                         aGCTGCGTTTAGTGACTTTTCCGAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAAc                                                                             >  2:1196101/1‑140 (MQ=255)

                                                         aGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAAc                                                                             >  1:30959/1‑140 (MQ=255)

                                                         aGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAAc                                                                             >  1:1054322/1‑140 (MQ=255)

                                                           cTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACt                                                                                      <  1:545516/129‑1 (MQ=255)

                                                           cTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACt                                                                                      >  2:545516/1‑129 (MQ=255)

                                                           cTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGt                                                                           >  2:460071/1‑140 (MQ=255)

                                                              cGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTa                                                                                        <  2:461953/124‑1 (MQ=255)

                                                              cGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTa                                                                                        >  1:461953/1‑124 (MQ=255)

                                                               gTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGgcg                                                                       <  2:226736/140‑1 (MQ=255)

                                                                tttAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGgcgc                                                                      <  1:280098/140‑1 (MQ=255)

                                                                tttAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGgcgc                                                                      <  2:235549/140‑1 (MQ=255)

                                                                  tAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCAt                                                                    <  2:30959/140‑1 (MQ=255)

                                                                        cTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTg                                                              <  1:25498/140‑1 (MQ=255)

                                                                                aaCTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGtt                                                      <  1:1196101/140‑1 (MQ=255)

                                                                                     gTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTg                                                              <  2:194535/127‑1 (MQ=255)

                                                                                     gTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTg                                                              <  1:1117183/127‑1 (MQ=255)

                                                                                     gTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTg                                                              >  1:194535/1‑127 (MQ=255)

                                                                                     gTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTg                                                              >  2:1117183/1‑127 (MQ=255)

                                                                                     gTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACcg                                                 >  1:639105/1‑140 (MQ=255)

                                                                                     gTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACcg                                                 >  1:941151/1‑140 (MQ=255)

                                                                                             cTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAg                                         >  1:526633/1‑140 (MQ=255)

                                                                                                tCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCa                                      <  1:290277/140‑1 (MQ=255)

                                                                                                     aCAGTCAGTACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTg                                 <  2:169073/140‑1 (MQ=255)

                                                                                                         tcagtACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGcgcg                             >  2:182948/1‑140 (MQ=255)

                                                                                                         tcagtACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGcgcg                             >  1:628904/1‑140 (MQ=255)

                                                                                                         tcagtACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGcgcg                             >  2:54526/1‑140 (MQ=255)

                                                                                                           agtACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGAc                           <  2:639105/140‑1 (MQ=255)

                                                                                                           agtACACCACCGATGCCACCAAACGTCTGACATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGAc                           <  1:554954/140‑1 (MQ=255)

                                                                                                            gtACACCACCGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACt                          <  2:941151/140‑1 (MQ=255)

                                                                                                                accaccGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTAccc                      <  2:469151/140‑1 (MQ=255)

                                                                                                                  caccGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCgg                    >  1:750442/1‑140 (MQ=255)

                                                                                                                  caccGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCgg                    >  2:166242/1‑140 (MQ=255)

                                                                                                                  caccGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCg                     >  1:137885/1‑139 (MQ=255)

                                                                                                                  caccGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCg                     <  2:137885/139‑1 (MQ=255)

                                                                                                                   accGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGa                   <  1:166242/140‑1 (MQ=255)

                                                                                                                   accGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGa                   <  2:615709/140‑1 (MQ=255)

                                                                                                                   accGATGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGa                   >  1:8992/1‑140 (MQ=255)

                                                                                                                       aTGCCACCAAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATAcc               >  2:1190969/1‑140 (MQ=255)

                                                                                                                             ccaAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCt         <  1:178419/140‑1 (MQ=255)

                                                                                                                              caAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTa        >  1:36392/1‑140 (MQ=255)

                                                                                                                              caAACGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTa        >  1:835687/1‑140 (MQ=255)

                                                                                                                               aaaCGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTAc       >  1:400927/1‑140 (MQ=255)

                                                                                                                                  cGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTAcgcg    <  1:924217/140‑1 (MQ=255)

                                                                                                                                  cGTCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTAcgcg    <  1:460071/140‑1 (MQ=255)

                                                                                                                                    tCTGGCATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTg  <  2:870283/140‑1 (MQ=255)

TGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCGATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACCACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGAACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTG  >  NC_000913/2736511‑2736782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A