Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,770,799 (C)5→4 coding (119/444 nt) yfjS → CP4‑57 prophage; inner membrane lipoprotein YfjS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,770,7950C.100.0% 294.0 / NA 68coding (115/444 nt)yfjSCP4‑57 prophage; inner membrane lipoprotein YfjS
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (36/32);  total (36/32)

GGAAAAAATAATGAAACGTAAAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACGCCCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTT  >  NC_000913/2770671‑2770930
                                                                                                                            |                                                                                                                                       
ggAAAAAATAATGAAACGTAAAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGa                                                                                                                         >  2:1048358/1‑140 (MQ=255)
   aaaaaTAATGAAACGTATAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGAtgt                                                                                                                      >  2:488988/1‑140 (MQ=255)
   aaaaaTAATGAAACGTAAAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGAtgt                                                                                                                      >  2:1198466/1‑140 (MQ=255)
        taatGAAACGTAAAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCa                                                                                                                 <  2:624827/140‑1 (MQ=255)
            gAAACGTAAAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCg                                                                                                             >  1:56953/1‑140 (MQ=255)
            gAAACGTAAAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCg                                                                                                             <  2:56953/140‑1 (MQ=255)
                         cTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTc                                                                                                >  2:907795/1‑140 (MQ=255)
                          tACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCa                                                                                               >  1:808381/1‑140 (MQ=255)
                           aCCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGatgatg                                                                                                  <  2:496998/136‑1 (MQ=255)
                           aCCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGatgatg                                                                                                  >  1:496998/1‑136 (MQ=255)
                              tctGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCga                                                                                           <  2:559350/140‑1 (MQ=255)
                              tctGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCga                                                                                           <  1:335021/140‑1 (MQ=255)
                               ctgctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATTAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaa                                                                                          >  1:881338/1‑140 (MQ=255)
                               ctgctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTc                                                                                                           >  2:480370/1‑123 (MQ=255)
                               ctgctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTc                                                                                                           <  1:480370/123‑1 (MQ=255)
                                tgctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaag                                                                                         <  1:1198466/140‑1 (MQ=255)
                                tgctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaag                                                                                         <  2:203936/140‑1 (MQ=255)
                                 gctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATTAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaaga                                                                                        <  2:881338/140‑1 (MQ=255)
                                 gctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaaga                                                                                        >  1:659658/1‑140 (MQ=255)
                                 gctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaaga                                                                                        <  2:778942/140‑1 (MQ=255)
                                 gctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaaga                                                                                        >  1:694699/1‑140 (MQ=255)
                                  ctgGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCgaagaa                                                                                       >  1:1086607/1‑140 (MQ=255)
                                      cgcTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGt                                                                                   >  2:1052721/1‑140 (MQ=255)
                                      cgcTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGt                                                                                   <  2:789076/140‑1 (MQ=255)
                                      cgcTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGt                                                                                   >  1:241964/1‑140 (MQ=255)
                                       gcTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTc                                                                                  >  1:379501/1‑140 (MQ=255)
                                       gcTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTc                                                                                  >  1:83236/1‑140 (MQ=255)
                                        cTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTca                                                                                 >  2:551748/1‑140 (MQ=255)
                                                   ctctctGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCtt                                                                      <  1:345394/140‑1 (MQ=255)
                                                         gTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATc                                                                >  1:198846/1‑140 (MQ=255)
                                                          tttCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATcc                                                               >  1:634031/1‑140 (MQ=255)
                                                            tCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCgg                                                             <  1:1052721/140‑1 (MQ=255)
                                                               gAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGtct                                                          <  1:551748/140‑1 (MQ=255)
                                                                aGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTg                                                                          <  2:856618/123‑1 (MQ=255)
                                                                aGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTg                                                                          >  1:856618/1‑123 (MQ=255)
                                                                aGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGtctc                                                         >  1:132939/1‑140 (MQ=255)
                                                                aGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGtctc                                                         >  1:153677/1‑140 (MQ=255)
                                                                aGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGtctc                                                         >  1:426298/1‑140 (MQ=255)
                                                                  cgcCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCAc                                                       >  1:555322/1‑140 (MQ=255)
                                                                   gcCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCAcc                                                      <  2:426298/140‑1 (MQ=255)
                                                                    ccTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGGCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCAccc                                                     >  2:1100395/1‑140 (MQ=255)
                                                                    ccTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCAccc                                                     >  2:530058/1‑140 (MQ=255)
                                                                      tGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTg                                                   <  2:555322/140‑1 (MQ=255)
                                                                       gCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGc                                                  >  1:687986/1‑140 (MQ=255)
                                                                         gATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAg                                                <  1:907795/140‑1 (MQ=255)
                                                                                 gAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGTCCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAATAATGGTCACAGGTTGGCTTCTCAGCCGGTGTCTCCTGGCAGTTCTTACg                                        <  2:864114/140‑1 (MQ=255)
                                                                                 gAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACg                                        <  2:153677/140‑1 (MQ=255)
                                                                                 gAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACg                                        <  2:659658/140‑1 (MQ=255)
                                                                                       tgaCCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCg                                  >  1:1058282/1‑140 (MQ=255)
                                                                                       tgaCCTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCg                                  >  2:623036/1‑140 (MQ=255)
                                                                                           cTCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAg                              <  2:687986/140‑1 (MQ=255)
                                                                                            tCAAAGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGt                             >  1:441125/1‑140 (MQ=255)
                                                                                              aaaGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCg                           >  1:894090/1‑140 (MQ=255)
                                                                                              aaaGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCg                           <  2:808381/140‑1 (MQ=255)
                                                                                              aaaGCTATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCg                           <  1:1048358/140‑1 (MQ=255)
                                                                                                   tATCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGa                      <  2:634031/140‑1 (MQ=255)
                                                                                                     tCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGAt                     <  2:473282/139‑1 (MQ=255)
                                                                                                     tCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGAt                     >  1:473282/1‑139 (MQ=255)
                                                                                                     tCAGTAAATTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATg                    >  2:386020/1‑140 (MQ=255)
                                                                                                           aaTTTAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCg              <  2:694699/140‑1 (MQ=255)
                                                                                                               tAAGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAggg          >  2:668312/1‑140 (MQ=255)
                                                                                                                 aGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTg        >  1:654174/1‑140 (MQ=255)
                                                                                                                 aGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTg        <  1:530058/140‑1 (MQ=255)
                                                                                                                 aGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTg        <  1:992852/140‑1 (MQ=255)
                                                                                                                 aGGACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTg        <  2:1058282/140‑1 (MQ=255)
                                                                                                                   gACCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGc      <  2:441125/140‑1 (MQ=255)
                                                                                                                    aCCTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCa     <  2:241964/140‑1 (MQ=255)
                                                                                                                     ccTCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAg    <  2:198846/140‑1 (MQ=255)
                                                                                                                       tCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGtt  >  1:224211/1‑140 (MQ=255)
                                                                                                                       tCACG‑CCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGtt  >  2:21518/1‑140 (MQ=255)
                                                                                                                            |                                                                                                                                       
GGAAAAAATAATGAAACGTAAAACACTACCTCTGCTGGCGCTGGTTGCCACCTCTCTGTTTCTGAGCGCCTGCGATGACAGGAGTGATGACCTCAAAGCTATCAGTAAATTTAAGGACCTCACGCCCCCGCGCTTCAGCGATGTGGTCAGCCGTCAGGATGATGTCAGCGAAGAATGGTCACAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTT  >  NC_000913/2770671‑2770930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A