Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,002,032	T→C	V563A (GTT→GCT)	xdhA →	putative xanthine dehydrogenase molybdenum‑binding subunit XdhA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,002,032	0	T	C	98.9%	317.7 / ‑4.9	91	V563A (GTT→GCT)	xdhA	putative xanthine dehydrogenase molybdenum‑binding subunit XdhA
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (56/34); total (57/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

TGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGTTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTAC  >  NC_000913/3001907‑3002167

tGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAag                                                                                                                           >  1:824388/1‑140 (MQ=255)

 gTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAaga                                                                                                                          <  1:1102518/140‑1 (MQ=255)

     ccGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCg                                                                                                                      >  2:100636/1‑140 (MQ=255)

       gcgcCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGtt                                                                                                                    >  1:689041/1‑140 (MQ=255)

         gcCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGTCCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTaa                                                                                                                  <  1:1226087/140‑1 (MQ=255)

          ccTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAATGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAAt                                                                                                                 >  1:163612/1‑140 (MQ=255)

          ccTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAAt                                                                                                                 >  2:647600/1‑140 (MQ=255)

          ccTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAAt                                                                                                                 >  2:43083/1‑140 (MQ=255)

          ccTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAAt                                                                                                                 >  2:1126580/1‑140 (MQ=255)

             gcgctgcgcAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGaa                                                                                                                            >  1:1045518/1‑126 (MQ=255)

             gcgctgcgcAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGaa                                                                                                                            <  2:1045518/126‑1 (MQ=255)

                ctgcgcAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGtt                                                                                                           <  2:372699/140‑1 (MQ=255)

                   cgcAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTaaa                                                                                                        >  2:530913/1‑140 (MQ=255)

                       gTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGAt                                                                                                    <  1:100636/140‑1 (MQ=255)

                          cGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTg                                                                                                 <  2:689041/140‑1 (MQ=255)

                             cACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCg                                                                                              >  1:808556/1‑140 (MQ=255)

                             cACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCg                                                                                              >  2:340639/1‑140 (MQ=255)

                              aCTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGa                                                                                             <  1:530913/140‑1 (MQ=255)

                               cTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGAt                                                                                            <  1:340639/140‑1 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAANAGATTTGGCGATGGa                                                                                         <  1:748005/140‑1 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         <  2:1002736/140‑1 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         >  1:1002736/1‑140 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         >  2:371992/1‑140 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         >  2:656908/1‑140 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         >  2:988627/1‑140 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         >  1:620584/1‑140 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         <  1:933081/140‑1 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         <  1:1126580/140‑1 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         <  1:253621/140‑1 (MQ=255)

                                  ttattaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGa                                                                                         >  1:167517/1‑140 (MQ=255)

                                    attaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACg                                                                                       <  2:1144739/140‑1 (MQ=255)

                                    attaAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACg                                                                                       <  2:808556/140‑1 (MQ=255)

                                       aaaaGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCtt                                                                                    >  1:705992/1‑140 (MQ=255)

                                         aaGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTc                                                                                  >  1:208195/1‑140 (MQ=255)

                                          agagAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCt                                                                                 >  2:567288/1‑140 (MQ=255)

                                          agagAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCt                                                                                 >  2:721204/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  1:722031/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  2:208398/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  1:555665/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  1:618643/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  2:291000/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  2:365471/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  2:1037612/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  2:733305/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  1:335312/1‑140 (MQ=255)

                                            agaAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTac                                                                               >  1:370847/1‑140 (MQ=255)

                                                      cGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAAc                                                                     >  2:317408/1‑140 (MQ=255)

                                                      cGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAAc                                                                     >  2:118604/1‑140 (MQ=255)

                                                         tCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAGAAGATTTGGCGATGGACGCTTTCTACCACCCTGAAcgcg                                                                  <  2:824388/140‑1 (MQ=255)

                                                              ccgcAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCggg                                                             <  1:208398/140‑1 (MQ=255)

                                                              ccgcAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCggg                                                             <  1:486768/140‑1 (MQ=255)

                                                                 cAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAg                                                          <  1:43083/140‑1 (MQ=255)

                                                                 cAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAg                                                          <  1:647600/140‑1 (MQ=255)

                                                                              tcagtcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGaaa                                             >  1:167171/1‑140 (MQ=255)

                                                                              tcagtcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGaaa                                             >  2:878073/1‑140 (MQ=255)

                                                                              tcagtcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGaaa                                             >  1:725805/1‑140 (MQ=255)

                                                                                 gtcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCt                                          >  2:1125295/1‑140 (MQ=255)

                                                                                 gtcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCt                                          >  1:412250/1‑140 (MQ=255)

                                                                                  tcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTc                                         >  2:598046/1‑140 (MQ=255)

                                                                                  tcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTc                                         >  2:817163/1‑140 (MQ=255)

                                                                                  tcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTc                                         >  2:652581/1‑140 (MQ=255)

                                                                                  tcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTc                                         >  1:1092901/1‑140 (MQ=255)

                                                                                  tcagCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTc                                         >  1:919822/1‑140 (MQ=255)

                                                                                      cGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATc                                     <  1:118604/140‑1 (MQ=255)

                                                                                        aTGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGTTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCaa                                   >  1:902642/1‑140 (MQ=255)

                                                                                              cTGACCCTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGTACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAaccac                             <  2:1121198/140‑1 (MQ=255)

                                                                                                  cccTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAACTCTCTGCTGAAAGCTCCATCAAAACCACCACt                         >  1:856053/1‑140 (MQ=255)

                                                                                                   ccTGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTa                        >  1:446419/1‑140 (MQ=255)

                                                                                                     tGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAAc                      >  1:39744/1‑140 (MQ=255)

                                                                                                     tGATAAAAGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATCTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAAc                      >  1:896850/1‑140 (MQ=255)

                                                                                                         aaaaGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCAc                  <  1:567288/140‑1 (MQ=255)

                                                                                                           aaGGCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCg                <  1:365471/140‑1 (MQ=255)

                                                                                                              gCCATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCg             <  2:446419/140‑1 (MQ=255)

                                                                                                               ccATATCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGt            <  2:39744/140‑1 (MQ=255)

                                                                                                                 atatCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGttt          >  2:676805/1‑140 (MQ=255)

                                                                                                                 atatCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGttt          <  2:167171/140‑1 (MQ=255)

                                                                                                                 atatCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGttt          >  1:1032004/1‑140 (MQ=255)

                                                                                                                 atatCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGttt          >  1:497042/1‑140 (MQ=255)

                                                                                                                 atatCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCGTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGttt          >  2:649301/1‑140 (MQ=255)

                                                                                                                  tatCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCCACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTg         >  2:994702/1‑140 (MQ=255)

                                                                                                                   atCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCAc                  <  2:287189/130‑1 (MQ=255)

                                                                                                                   atCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCAc                  >  1:287189/1‑130 (MQ=255)

                                                                                                                   atCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTgg        <  2:725805/140‑1 (MQ=255)

                                                                                                                    tCGTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGc       <  2:167517/140‑1 (MQ=255)

                                                                                                                      gTGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTg     <  2:919822/140‑1 (MQ=255)

                                                                                                                       tGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGt    >  2:448337/1‑140 (MQ=255)

                                                                                                                       tGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGt    >  2:352898/1‑140 (MQ=255)

                                                                                                                       tGCTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGt    >  1:914838/1‑140 (MQ=255)

                                                                                                                        gctggctgAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTa   >  1:526121/1‑140 (MQ=255)

                                                                                                                        gctggctgAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTa   >  1:1138975/1‑140 (MQ=255)

                                                                                                                        gctggctgAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTa   >  2:1228135/1‑140 (MQ=255)

                                                                                                                         cTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTAc  <  2:370847/140‑1 (MQ=255)

                                                                                                                         cTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTAc  <  2:208195/140‑1 (MQ=255)

                                                                                                                         cTGGCTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTAc  <  1:371992/140‑1 (MQ=255)

TGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAAAATCATCGCTCACGCCGCAGTCATGCTACATCAGTCAGCGATGAATCTGACCCTGATAAAAGGCCATATCGTGCTGGTTGAACGACCGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAAACCACCACTAACCCACCGGCGTTTGGCTGTAC  >  NC_000913/3001907‑3002167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A