Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,028,806 (C)5→4 coding (207/489 nt) ygfS ← putative oxidoreductase, 4Fe‑4S ferredoxin‑type subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,028,8020C.100.0% 404.2 / NA 93coding (211/489 nt)ygfSputative oxidoreductase, 4Fe‑4S ferredoxin‑type subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (48/45);  total (48/45)

CATTTCACAATTTGTTGTCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGTTCTGAAGGGTG  >  NC_000913/3028663‑3028937
                                                                                                                                           |                                                                                                                                       
cATTTCACAATTTGTTGTCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAgcgc                                                                                                                                         <  2:677940/140‑1 (MQ=255)
  tttCACAATTTGTTGTCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCGccc                                                                                                                                       >  2:942435/1‑140 (MQ=255)
           ttgttgTCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCa                                                                                                                             <  1:833568/140‑1 (MQ=255)
           ttgttgTCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCa                                                                                                                             <  2:240071/140‑1 (MQ=255)
           ttgttgTCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCa                                                                                                                             <  2:1129139/140‑1 (MQ=255)
               tgtCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAgcg                                                                                                                         >  1:403067/1‑140 (MQ=255)
               tgtCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAgcg                                                                                                                         >  2:177338/1‑140 (MQ=255)
               tgtCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAgcg                                                                                                                         <  2:496303/140‑1 (MQ=255)
                 tCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGcc                                                                                                                       <  1:437120/140‑1 (MQ=255)
                 tCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGcc                                                                                                                       <  1:432869/140‑1 (MQ=255)
                    ggTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAac                                                                                                                    >  1:635009/1‑140 (MQ=255)
                     gTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAaca                                                                                                                   <  1:366648/140‑1 (MQ=255)
                        tCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCACCTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACaa                                                                                                                <  2:32824/140‑1 (MQ=255)
                        tCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACgggg                                                                                                                               <  2:319871/125‑1 (MQ=255)
                        tCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACgggg                                                                                                                               >  1:319871/1‑125 (MQ=255)
                        tCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACaa                                                                                                                >  1:966675/1‑140 (MQ=255)
                        tCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACaa                                                                                                                >  1:187784/1‑140 (MQ=255)
                           cccGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAggg                                                                                                             >  2:545813/1‑140 (MQ=255)
                            ccGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAgggg                                                                                                            <  1:278428/140‑1 (MQ=255)
                            ccGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAgggg                                                                                                            <  1:942435/140‑1 (MQ=255)
                               gCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGt                                                                                                         >  2:90459/1‑140 (MQ=255)
                                  aCGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGtttt                                                                                                      >  2:994242/1‑140 (MQ=255)
                                      cTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTcaca                                                                                                  <  2:148360/140‑1 (MQ=255)
                                      cTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTcaca                                                                                                  >  1:607104/1‑140 (MQ=255)
                                              tGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCTAACACAAGGGGCGTTTTCACACTGATGGc                                                                                          >  1:971153/1‑140 (MQ=255)
                                              tGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAgggg                                                                                                            <  2:214981/122‑1 (MQ=255)
                                              tGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAgggg                                                                                                            >  1:214981/1‑122 (MQ=255)
                                              tGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGc                                                                                          >  2:561599/1‑140 (MQ=255)
                                              tGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGc                                                                                          >  2:564828/1‑140 (MQ=255)
                                                aTCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGcac                                                                                        <  1:767688/140‑1 (MQ=255)
                                                aTCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGcac                                                                                        <  2:665903/140‑1 (MQ=255)
                                                     tCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCAc                                                                                   <  1:177338/140‑1 (MQ=255)
                                                        aaaCGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCgg                                                                                <  2:1074297/140‑1 (MQ=255)
                                                          aCGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGgcg                                                                              >  1:82889/1‑140 (MQ=255)
                                                            gggCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCa                                                                            <  1:166841/140‑1 (MQ=255)
                                                             ggCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCAc                                                                                   >  2:1156677/1‑132 (MQ=255)
                                                             ggCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCAc                                                                                   <  1:1156677/132‑1 (MQ=255)
                                                             ggCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCAc                                                                           <  1:90459/140‑1 (MQ=255)
                                                             ggCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCAc                                                                           >  2:260660/1‑140 (MQ=255)
                                                              gcacgcacTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACt                                                                          >  2:1043182/1‑140 (MQ=255)
                                                               cacgcacTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTg                                                                         >  2:841587/1‑140 (MQ=255)
                                                               cacgcacTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGAG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGgcg                                                                              <  1:121040/135‑1 (MQ=255)
                                                               cacgcacTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGAG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGgcg                                                                              >  2:121040/1‑135 (MQ=255)
                                                                 cgcacTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGAt                                                                       >  2:531228/1‑140 (MQ=255)
                                                                  gcacTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATg                                                                      <  1:372697/140‑1 (MQ=255)
                                                                        aCGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTcc                                                                <  2:694893/140‑1 (MQ=255)
                                                                        aCGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTcc                                                                >  2:411680/1‑140 (MQ=255)
                                                                        aCGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTcc                                                                >  1:1182316/1‑140 (MQ=255)
                                                                         cGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCa                                                               <  1:994242/140‑1 (MQ=255)
                                                                          gCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATg                                                                      <  2:609201/132‑1 (MQ=255)
                                                                          gCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATg                                                                      >  1:609201/1‑132 (MQ=255)
                                                                           cAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGt                                                             <  2:485131/140‑1 (MQ=255)
                                                                           cAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGt                                                             <  2:359514/140‑1 (MQ=255)
                                                                            aaCTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTc                                                            <  2:966675/140‑1 (MQ=255)
                                                                            aaCTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTc                                                            >  2:59459/1‑140 (MQ=255)
                                                                            aaCTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTc                                                            <  2:187784/140‑1 (MQ=255)
                                                                               tccgACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCCTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCt                                                         <  2:403067/137‑1 (MQ=255)
                                                                                   aCAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTcc                                                                >  1:850838/1‑129 (MQ=255)
                                                                                   aCAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTcc                                                                <  2:850838/129‑1 (MQ=255)
                                                                                       ccAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTc                                                 >  1:457429/1‑140 (MQ=255)
                                                                                        cAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCa                                                >  1:773732/1‑140 (MQ=255)
                                                                                          aTACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGc                                              <  2:1182316/140‑1 (MQ=255)
                                                                                           tACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGcc                                             <  1:1193644/140‑1 (MQ=255)
                                                                                             cAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCgg                                           <  1:1043182/140‑1 (MQ=255)
                                                                                             cAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCgg                                           <  1:561599/140‑1 (MQ=255)
                                                                                             cAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCgg                                           <  1:564828/140‑1 (MQ=255)
                                                                                               aCGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCgggg                                         >  2:156929/1‑140 (MQ=255)
                                                                                                cGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGt                                        >  1:1183307/1‑140 (MQ=255)
                                                                                                 gggCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCATCACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTa                                       >  2:1121354/1‑140 (MQ=255)
                                                                                                  ggCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGtga                                      >  2:210261/1‑138 (MQ=255)
                                                                                                   gCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTaaa                                     >  2:499648/1‑140 (MQ=255)
                                                                                                   gCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTaaa                                     >  2:800802/1‑140 (MQ=255)
                                                                                                    cAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTaaaa                                    >  1:33903/1‑140 (MQ=255)
                                                                                                     aGAATTGGTCTGCACCATCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTaaaaa                                   >  1:703870/1‑140 (MQ=255)
                                                                                                     aGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTaaaaa                                   >  2:983376/1‑140 (MQ=255)
                                                                                                          tGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACAt                              <  1:373151/140‑1 (MQ=255)
                                                                                                          tGGTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACAt                              <  1:531228/140‑1 (MQ=255)
                                                                                                           ggTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATc                             <  2:330622/140‑1 (MQ=255)
                                                                                                            gTCTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCg                            >  2:843015/1‑140 (MQ=255)
                                                                                                              cTGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGc                          >  2:1068560/1‑140 (MQ=255)
                                                                                                               tGCACCACCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCa                         <  1:983376/140‑1 (MQ=255)
                                                                                                                 caccacCTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCAtt                       >  1:992395/1‑140 (MQ=255)
                                                                                                                  accaccTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTc                      <  2:464855/140‑1 (MQ=255)
                                                                                                                  accaccTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTc                      >  1:467390/1‑140 (MQ=255)
                                                                                                                    caccTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCaa                    <  1:1070397/140‑1 (MQ=255)
                                                                                                                      ccTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCTCTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACt                  >  1:275504/1‑140 (MQ=255)
                                                                                                                      ccTGCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACt                  >  1:781312/1‑140 (MQ=255)
                                                                                                                         gCTCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCt               <  1:691781/140‑1 (MQ=255)
                                                                                                                           tCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGt             >  1:585750/1‑140 (MQ=255)
                                                                                                                           tCGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGt             >  2:977629/1‑140 (MQ=255)
                                                                                                                            cGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGtt            >  2:361364/1‑140 (MQ=255)
                                                                                                                            cGCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGtt            >  2:215123/1‑140 (MQ=255)
                                                                                                                             gCCCATCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGTTc           <  2:1174891/140‑1 (MQ=255)
                                                                                                                                  tCGTCAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGTTCTGAAg      >  1:52357/1‑140 (MQ=255)
                                                                                                                                      cAGCG‑CCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGTTCTGAAGGGTg  <  1:215123/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                       
CATTTCACAATTTGTTGTCGGGTATCCCCCGGCAACGACTGAATGGTGATCATTCCAAACGGGCACGCACTGACGCAACTCTGACAGCCAATACAACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGGCAAGCGCCAACACAAGGGGCGTTTTCACACTGATGGCACATCACCGGCGCACTGATGCTGTCCAGTCGCTGTACCTTCAGCCGGGGTAAAAAGACATCGGCATTCAACTCCTGTTCTGAAGGGTG  >  NC_000913/3028663‑3028937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A