Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,171,047	G→A	P188P (CCG→CCA)	qseC →	sensory histidine kinase QseC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,171,047	0	G	A	100.0%	289.4 / NA	81	P188P (CCG→CCA)	qseC	sensory histidine kinase QseC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (40/41); total (40/41)

TTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGA  >  NC_000913/3170914‑3171183

ttgttgGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAAc                                                                                                                                    >  1:1009563/1‑140 (MQ=255)

ttgttgGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAAc                                                                                                                                    >  2:84189/1‑140 (MQ=255)

 tgttgGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACa                                                                                                                                   >  1:1110076/1‑140 (MQ=255)

  gttgGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACaa                                                                                                                                  >  1:181666/1‑140 (MQ=255)

           gAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCt                                                                                                                         >  2:774982/1‑140 (MQ=255)

               gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCa                                                                                                                     <  2:1211288/140‑1 (MQ=255)

               gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCa                                                                                                                     <  1:84189/140‑1 (MQ=255)

               gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCa                                                                                                                     <  1:1181653/140‑1 (MQ=255)

               gggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCa                                                                                                                     <  1:110485/140‑1 (MQ=255)

                ggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCt                                                                                                                         >  2:242408/1‑135 (MQ=255)

                ggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCt                                                                                                                         <  1:242408/135‑1 (MQ=255)

                ggAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCAc                                                                                                                    >  2:813672/1‑140 (MQ=255)

                  aaTACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTCATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTa                                                                                                                  <  2:1164292/140‑1 (MQ=255)

                   aTACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTAc                                                                                                                 <  2:938016/140‑1 (MQ=255)

                    tACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACg                                                                                                                <  2:755312/140‑1 (MQ=255)

                    tACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACg                                                                                                                <  2:383585/140‑1 (MQ=255)

                    tACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACg                                                                                                                <  1:502000/140‑1 (MQ=255)

                     aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACt                                                                                                                               >  2:55101/1‑124 (MQ=255)

                     aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACt                                                                                                                               <  1:55101/124‑1 (MQ=255)

                     aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGt                                                                                                               <  2:208351/140‑1 (MQ=255)

                     aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGt                                                                                                               <  1:324038/140‑1 (MQ=255)

                     aCCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGt                                                                                                               >  2:385192/1‑140 (MQ=255)

                      ccGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTa                                                                                                              >  2:1144390/1‑140 (MQ=255)

                          gAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCg                                                                                                          <  1:782240/140‑1 (MQ=255)

                           aaGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGt                                                                                                         >  1:1248986/1‑140 (MQ=255)

                                 tGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCt                                                                                                   >  1:1132107/1‑140 (MQ=255)

                                 tGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCt                                                                                                   >  1:691128/1‑140 (MQ=255)

                                 tGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCt                                                                                                   >  1:431858/1‑140 (MQ=255)

                                    cgcTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGAc                                                                                                <  1:813672/140‑1 (MQ=255)

                                       tGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCg                                                                                             >  2:931141/1‑140 (MQ=255)

                                         gCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGa                                                                                           >  1:1199730/1‑140 (MQ=255)

                                              tgttgCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAAc                                                                                      >  1:426444/1‑140 (MQ=255)

                                                   ccGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGAc                                                                                                <  2:1239516/125‑1 (MQ=255)

                                                   ccGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGAc                                                                                                >  1:1239516/1‑125 (MQ=255)

                                                          aTTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGa                                                                          <  2:1132107/140‑1 (MQ=255)

                                                           ttGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGAc                                                                         >  2:715781/1‑140 (MQ=255)

                                                             gATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTg                                                                       <  1:774982/140‑1 (MQ=255)

                                                               tCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGc                                                                     <  2:426444/140‑1 (MQ=255)

                                                                cccGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCg                                                                    >  1:879764/1‑140 (MQ=255)

                                                                 ccGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGt                                                                   <  2:181666/140‑1 (MQ=255)

                                                                 ccGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGG‑AAAACCACTAAACGCGACTGGCGTa                                                                  >  2:1214734/1‑140 (MQ=255)

                                                                    tGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTAcc                                                                >  2:356283/1‑140 (MQ=255)

                                                                     ggCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGa                                                                          <  2:1105755/129‑1 (MQ=255)

                                                                     ggCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGa                                                                          >  1:1105755/1‑129 (MQ=255)

                                                                      gCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCa                                                              >  1:981815/1‑140 (MQ=255)

                                                                       cTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAg                                                             >  1:616799/1‑140 (MQ=255)

                                                                               aCTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGc                                                     <  1:715781/140‑1 (MQ=255)

                                                                                cTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCg                                                    <  2:1248986/140‑1 (MQ=255)

                                                                                 tGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCgg                                                   >  1:939303/1‑140 (MQ=255)

                                                                                  gCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGc                                                  >  1:394426/1‑140 (MQ=255)

                                                                                  gCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGc                                                  <  2:961937/140‑1 (MQ=255)

                                                                                         aTGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGt                                           >  2:660921/1‑140 (MQ=255)

                                                                                            ttAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGa                                        <  2:616799/140‑1 (MQ=255)

                                                                                               atcatcATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTc                                     <  1:647415/140‑1 (MQ=255)

                                                                                               atcatcATGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTc                                     <  1:356283/140‑1 (MQ=255)

                                                                                                tcatcaTGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCg                                    <  2:691128/140‑1 (MQ=255)

                                                                                                tcatcaTGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCg                                    <  1:385192/140‑1 (MQ=255)

                                                                                                 catcatGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGc                                   <  1:1144390/140‑1 (MQ=255)

                                                                                                    catGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTaa                                >  2:1248934/1‑140 (MQ=255)

                                                                                                    catGATGGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTaa                                >  1:698234/1‑140 (MQ=255)

                                                                                                      tgatgGTACTACTGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAAt                              >  2:608454/1‑140 (MQ=255)

                                                                                                              ctactGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGtt                      <  2:394426/140‑1 (MQ=255)

                                                                                                                 ctGGGTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGc                   >  1:721208/1‑140 (MQ=255)

                                                                                                                   gggTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGccc                 >  1:1006644/1‑140 (MQ=255)

                                                                                                                    ggTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCg                <  2:879764/140‑1 (MQ=255)

                                                                                                                    ggTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCg                >  2:811278/1‑140 (MQ=255)

                                                                                                                    ggTCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCg                >  1:941996/1‑140 (MQ=255)

                                                                                                                      tCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGca              >  2:767875/1‑140 (MQ=255)

                                                                                                                      tCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGca              <  2:981815/140‑1 (MQ=255)

                                                                                                                      tCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGca              >  2:347032/1‑140 (MQ=255)

                                                                                                                      tCGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGca              >  1:1090257/1‑140 (MQ=255)

                                                                                                                       cGTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGCCCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGcac             <  2:1090257/140‑1 (MQ=255)

                                                                                                                        gTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGcaca            <  2:721208/140‑1 (MQ=255)

                                                                                                                        gTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGcaca            <  1:931141/140‑1 (MQ=255)

                                                                                                                        gTGAACTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGcaca            <  1:1157863/140‑1 (MQ=255)

                                                                                                                           aaCTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGcaca            >  2:1046200/1‑137 (MQ=255)

                                                                                                                           aaCTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGcaca            <  1:1046200/137‑1 (MQ=255)

                                                                                                                            aCTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATg        <  2:1009563/140‑1 (MQ=255)

                                                                                                                            aCTCGCGCCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATg        <  1:1152471/140‑1 (MQ=255)

                                                                                                                                gcgcCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCgat    <  2:521054/140‑1 (MQ=255)

                                                                                                                                gcgcCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCgat    <  2:217681/140‑1 (MQ=255)

                                                                                                                                gcgcCACTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCgat    >  1:217681/1‑140 (MQ=255)

                                                                                                                                  gccacTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCgatga  <  1:608454/140‑1 (MQ=255)

                                                                                                                                  gccacTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCgatga  <  2:941996/140‑1 (MQ=255)

TTGTTGGCCAGGAATGGGAATACCGTGAAGACATGGCGCTGGCGATTGTTGCCGGGCAATTGATCCCGTGGCTGGTCGCACTGCCGATTATGTTAATCATCATGATGGTACTACTGGGTCGTGAACTCGCGCCGCTGAACAAACTGGCGCTGGCACTACGTATGCGTGACCCTGACTCGGAAAAACCACTAAACGCGACTGGCGTACCCAGCGAAGTGCGGCCACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGA  >  NC_000913/3170914‑3171183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A