Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,191,075	T→C	G148G (GGT→GGC)	yqiI →	putative fimbrial protein YqiI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,191,075	0	T	C	100.0%	452.7 / NA	125	G148G (GGT→GGC)	yqiI	putative fimbrial protein YqiI
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (66/59); total (66/59)

Only 100 of 126 total aligned reads displayed.

TCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACTTGAATTTAAAGGTATGAGC  >  NC_000913/3190942‑3191210

tCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGaa                                                                                                                                   <  2:316390/140‑1 (MQ=255)

  ggTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAAcc                                                                                                                                 >  2:775477/1‑140 (MQ=255)

  ggTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAAcc                                                                                                                                 >  1:979489/1‑140 (MQ=255)

                  gggTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACt                                                                                                                 >  2:258771/1‑140 (MQ=255)

                   ggTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACtt                                                                                                                >  2:443011/1‑140 (MQ=255)

                    gTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACttt                                                                                                               >  2:895015/1‑140 (MQ=255)

                    gTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACttt                                                                                                               >  1:54291/1‑140 (MQ=255)

                    gTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACttt                                                                                                               <  2:1197647/140‑1 (MQ=255)

                       gATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTcc                                                                                                            >  2:338935/1‑140 (MQ=255)

                       gATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTcc                                                                                                            >  1:1209853/1‑140 (MQ=255)

                        aTTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCa                                                                                                           >  1:816543/1‑140 (MQ=255)

                        aTTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCa                                                                                                           >  1:398396/1‑140 (MQ=255)

                            tGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTAc                                                                                                       <  2:54291/140‑1 (MQ=255)

                            tGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTAc                                                                                                       >  1:554701/1‑140 (MQ=255)

                            tGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTAc                                                                                                       >  2:1173683/1‑140 (MQ=255)

                             gATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACg                                                                                                      >  2:459396/1‑140 (MQ=255)

                                tCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGt                                                                                                   <  1:1096552/140‑1 (MQ=255)

                                 cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTAc                                                                                                       >  2:812341/1‑135 (MQ=255)

                                 cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTAc                                                                                                       <  1:812341/135‑1 (MQ=255)

                                 cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                                                                  <  1:990526/140‑1 (MQ=255)

                                 cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                                                                  <  2:398396/140‑1 (MQ=255)

                                 cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                                                                  <  1:338935/140‑1 (MQ=255)

                                 cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                                                                  <  1:766989/140‑1 (MQ=255)

                                 cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                                                                  <  1:443011/140‑1 (MQ=255)

                                  tACATCTCCACTACCTATT‑CAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCa                                                                                                >  1:1115608/1‑140 (MQ=255)

                                    cATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAg                                                                                               >  1:1091032/1‑140 (MQ=255)

                                    cATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAg                                                                                               >  2:898212/1‑140 (MQ=255)

                                     aTCTCCACTACCTATTGCAGCACCTGTATGTATTGATA‑AAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                                                             <  2:351814/140‑1 (MQ=255)

                                      tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                                                             <  2:1063539/140‑1 (MQ=255)

                                      tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                                                             >  2:582153/1‑140 (MQ=255)

                                      tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                                                             <  1:775477/140‑1 (MQ=255)

                                       ctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCta                                                                                            >  1:1040525/1‑140 (MQ=255)

                                       ctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCta                                                                                            >  1:1005112/1‑140 (MQ=255)

                                         ccACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAg                                                                                               <  1:1183751/135‑1 (MQ=255)

                                         ccACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCtata                                                                                          >  2:202134/1‑140 (MQ=255)

                                         ccACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCtata                                                                                          >  1:637200/1‑140 (MQ=255)

                                          cACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCta                                                                                            <  2:251864/137‑1 (MQ=255)

                                          cACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCta                                                                                            >  1:251864/1‑137 (MQ=255)

                                            cTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAg                                                                                                    >  2:541512/1‑127 (MQ=255)

                                            cTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                                                             <  1:446462/134‑1 (MQ=255)

                                            cTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                                                             >  2:446462/1‑134 (MQ=255)

                                              aCCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                                                             <  1:461139/132‑1 (MQ=255)

                                               ccTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTaa                                                                                    >  1:950912/1‑140 (MQ=255)

                                               ccTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTaa                                                                                    >  2:877032/1‑140 (MQ=255)

                                                cTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAag                                                                                   <  1:258771/140‑1 (MQ=255)

                                                 tATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGTACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                                                                  <  1:75588/124‑1 (MQ=255)

                                                 tATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGTACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                                                                  >  2:75588/1‑124 (MQ=255)

                                                  aTTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAagct                                                                                 >  1:102070/1‑140 (MQ=255)

                                                  aTTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAagct                                                                                 >  2:1011575/1‑140 (MQ=255)

                                                  aTTGCAGCACCTGTATGTATT‑ATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAagcta                                                                                >  1:1033651/1‑140 (MQ=255)

                                                    tGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCta                                                                                            >  2:1074274/1‑127 (MQ=255)

                                                    tGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAagctag                                                                               >  1:1004968/1‑140 (MQ=255)

                                                    tGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAagctag                                                                               >  1:1070291/1‑140 (MQ=255)

                                                       agcaCCTGTATGTATTGATATAAATGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAgctagcta                                                                            >  2:303659/1‑140 (MQ=255)

                                                         caCCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTaaa                                                                          <  1:225541/140‑1 (MQ=255)

                                                             tgtatgtaTTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAag                                                                                   >  2:1240300/1‑127 (MQ=255)

                                                             tgtatgtaTTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAag                                                                                   <  1:1240300/127‑1 (MQ=255)

                                                                atgtatTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCa                                                                   >  1:235821/1‑140 (MQ=255)

                                                                  gtatTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAAt                                                                 <  2:1040525/140‑1 (MQ=255)

                                                                   tatTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATa                                                                <  1:1011575/140‑1 (MQ=255)

                                                                      tGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAg                                                             >  1:51558/1‑140 (MQ=255)

                                                                      tGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAg                                                             >  1:351246/1‑140 (MQ=255)

                                                                      tGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTACCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAg                                                             >  1:928033/1‑140 (MQ=255)

                                                                        atatAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGta                                                           >  1:665668/1‑140 (MQ=255)

                                                                        atatAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGta                                                           >  1:558183/1‑140 (MQ=255)

                                                                        atatAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGta                                                           >  2:623989/1‑140 (MQ=255)

                                                                        atatAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGta                                                           >  1:871710/1‑140 (MQ=255)

                                                                         tataAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAAt                                                                 <  1:904779/133‑1 (MQ=255)

                                                                         tataAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaa                                                          >  2:743346/1‑140 (MQ=255)

                                                                         tataAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaa                                                          >  2:965501/1‑140 (MQ=255)

                                                                         tataAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaa                                                          >  1:525793/1‑140 (MQ=255)

                                                                           taAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaaa                                                         >  2:811148/1‑139 (MQ=255)

                                                                              aGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaaataaa                                                     >  2:365728/1‑140 (MQ=255)

                                                                                  aGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAAc                                                 <  2:1091032/140‑1 (MQ=255)

                                                                                  aGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAAc                                                 <  2:51558/140‑1 (MQ=255)

                                                                                   gCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaaataaa                                                     <  1:484880/135‑1 (MQ=255)

                                                                                   gCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaaataaa                                                     >  2:484880/1‑135 (MQ=255)

                                                                                    ccGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACtt                                               >  1:72988/1‑140 (MQ=255)

                                                                                        aaCCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTAt                                           <  1:623989/140‑1 (MQ=255)

                                                                                           cTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTAc                                        <  1:365728/140‑1 (MQ=255)

                                                                                           cTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTAc                                        <  2:950912/140‑1 (MQ=255)

                                                                                           cTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTAc                                        <  1:877032/140‑1 (MQ=255)

                                                                                           cTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTAc                                        <  2:1115608/140‑1 (MQ=255)

                                                                                             tCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCt                                      >  1:642986/1‑140 (MQ=255)

                                                                                             tCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCt                                      <  1:323592/140‑1 (MQ=255)

                                                                                             tCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCt                                      <  2:72988/140‑1 (MQ=255)

                                                                                               gggAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGa                                    <  1:791117/140‑1 (MQ=255)

                                                                                                ggAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGAc                                   <  2:102070/140‑1 (MQ=255)

                                                                                                ggAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGAc                                   <  2:637200/140‑1 (MQ=255)

                                                                                                ggAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGAc                                   <  1:1008351/140‑1 (MQ=255)

                                                                                                  aaTGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTGAATAAAAAACTTGTATTACCTGACGa                                 <  1:1165437/140‑1 (MQ=255)

                                                                                                  aaTGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGa                                 <  2:871710/140‑1 (MQ=255)

                                                                                                     ggCTACAAAAAGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAAT‑AAGTAAATAAAAAACTTGTATTACCTGACGAatat                             >  1:144621/1‑140 (MQ=255)

                                                                                                               aGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACtt                    >  2:779041/1‑140 (MQ=255)

                                                                                                               aGCCCGCAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACtt                    <  2:218181/140‑1 (MQ=255)

                                                                                                                     cAGTCTGTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACTTGAAttt              >  2:692197/1‑140 (MQ=255)

                                                                                                                           gTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACTTGAATTTAAAGGt        <  1:898212/140‑1 (MQ=255)

                                                                                                                           gTAGTGGCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACTTGAATTTAAAGGt        <  2:558183/140‑1 (MQ=255)

                                                                                                                                ggcggcCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACTTGAATTTAAAGGTATGAg   <  2:949273/140‑1 (MQ=255)

                                                                                                                                 gCGGCCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACTTGAATTTAAAGGTATGAGc  <  2:1004968/140‑1 (MQ=255)

TCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTTGTATTACCTGACGAATATATAGCACTTGAATTTAAAGGTATGAGC  >  NC_000913/3190942‑3191210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A