Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,312,089 T→C D230G (GAT→GGT)  truB ← tRNA pseudouridine(55) synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,312,0890TC100.0% 261.4 / NA 73D230G (GAT→GGT) truBtRNA pseudouridine(55) synthase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (42/31);  total (42/31)

CACCAGATGTACGAACCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATATCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAGGTCAT  >  NC_000913/3311955‑3312224
                                                                                                                                      |                                                                                                                                       
cACCAGATGTACGAACCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCctgc                                                                                                                                    >  1:4172/1‑140 (MQ=255)
cACCAGATGTACGAACCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCctgc                                                                                                                                    >  1:1095122/1‑140 (MQ=255)
cACCAGATGTACGAACCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCctgc                                                                                                                                    >  1:420445/1‑140 (MQ=255)
         tACGAACCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCt                                                                                                                           <  2:81668/140‑1 (MQ=255)
           cGAACCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCTGAAGCTGGACTGTCCATTGGCATCAGTACTGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTg                                                                                                                         >  2:494178/1‑140 (MQ=255)
             aaaagggTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCt                                                                                                                       <  1:129322/136‑1 (MQ=255)
             aaCCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCt                                                                                                                       >  1:768012/1‑140 (MQ=255)
             aaCCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCt                                                                                                                       >  2:191466/1‑140 (MQ=255)
              aCCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCCGGAATACCCTGCTGTTCAGCTTGCTc                                                                                                                      >  2:436044/1‑140 (MQ=255)
               ccGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTca                                                                                                                     <  2:892406/140‑1 (MQ=255)
                cGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTcaa                                                                                                                    >  1:194210/1‑140 (MQ=255)
                 gggTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTcaac                                                                                                                   <  2:768012/140‑1 (MQ=255)
                    ttACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGCACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAg                                                                                                                <  2:676526/140‑1 (MQ=255)
                        cATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCa                                                                                                            <  2:194210/140‑1 (MQ=255)
                          tttttGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACg                                                                                                          <  2:7834/140‑1 (MQ=255)
                           ttttGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGc                                                                                                         >  1:131428/1‑140 (MQ=255)
                             ttGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAg                                                                                                       <  2:815874/140‑1 (MQ=255)
                              tGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAgg                                                                                                      <  2:37173/140‑1 (MQ=255)
                               gAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGt                                                                                                     >  1:676982/1‑140 (MQ=255)
                                            gaCGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCAc                                                                                        >  2:264350/1‑140 (MQ=255)
                                                 tAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATcc                                                                                   >  1:1006560/1‑140 (MQ=255)
                                                    cGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGtt                                                                                <  2:1006560/140‑1 (MQ=255)
                                                    cGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGtt                                                                                <  2:994818/140‑1 (MQ=255)
                                                         gATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAAcc                                                                           >  1:738074/1‑140 (MQ=255)
                                                          aTTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCg                                                                          <  2:420445/140‑1 (MQ=255)
                                                                     gATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAAc                                                                            <  2:520506/127‑1 (MQ=255)
                                                                     gATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAAc                                                                            >  1:520506/1‑127 (MQ=255)
                                                                     gATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATttactt                                                               >  1:878921/1‑140 (MQ=255)
                                                                     gATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATttactt                                                               >  1:428728/1‑140 (MQ=255)
                                                                     gATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATttactt                                                               >  1:280961/1‑140 (MQ=255)
                                                                            cGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCa                                                        >  2:1087295/1‑140 (MQ=255)
                                                                                   ggACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcg                                                 <  2:738074/140‑1 (MQ=255)
                                                                                    gACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgtgc                                                >  1:1249551/1‑140 (MQ=255)
                                                                                    gACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcgc                                                <  2:280961/140‑1 (MQ=255)
                                                                                    gACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcgc                                                <  2:131428/140‑1 (MQ=255)
                                                                                    gACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcgc                                                <  2:878921/140‑1 (MQ=255)
                                                                                         tCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGa                                                      <  2:959505/129‑1 (MQ=255)
                                                                                         tCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGa                                                      >  1:959505/1‑129 (MQ=255)
                                                                                         tCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcgc                                                >  1:940425/1‑135 (MQ=255)
                                                                                         tCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcgc                                                <  2:940425/135‑1 (MQ=255)
                                                                                             ttGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATa                                       <  1:191466/140‑1 (MQ=255)
                                                                                                   tCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcg                                                 >  2:356607/1‑124 (MQ=255)
                                                                                                   tCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGgcg                                                 <  1:356607/124‑1 (MQ=255)
                                                                                                   tCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATgc                                 >  2:84135/1‑140 (MQ=255)
                                                                                                   tCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATgc                                 >  1:518629/1‑140 (MQ=255)
                                                                                                   tCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATgc                                 >  2:30820/1‑140 (MQ=255)
                                                                                                   tCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATgc                                 >  1:387042/1‑140 (MQ=255)
                                                                                                   tCAGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGACAGACGGCGCAGGTAAATAACATgc                                 >  1:212322/1‑140 (MQ=255)
                                                                                                     aGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATgcgc                               >  2:307978/1‑140 (MQ=255)
                                                                                                     aGTAATGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATgcgc                               >  1:516997/1‑140 (MQ=255)
                                                                                                          tGGATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCcac                          >  2:975384/1‑140 (MQ=255)
                                                                                                           ggATCAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCcaca                         >  1:390816/1‑140 (MQ=255)
                                                                                                               cAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCg                     >  1:725633/1‑140 (MQ=255)
                                                                                                               cAAGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCg                     >  1:381560/1‑140 (MQ=255)
                                                                                                                aaGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGa                    <  2:676982/140‑1 (MQ=255)
                                                                                                                aaGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGa                    <  2:725633/140‑1 (MQ=255)
                                                                                                                 aGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAg                   >  1:337302/1‑140 (MQ=255)
                                                                                                                 aGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAg                   >  2:934264/1‑140 (MQ=255)
                                                                                                                 aGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAg                   >  2:766284/1‑140 (MQ=255)
                                                                                                                 aGTAACTCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAg                   >  1:12454/1‑140 (MQ=255)
                                                                                                                       tCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTc             >  1:747959/1‑140 (MQ=255)
                                                                                                                       tCCGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTc             >  2:570227/1‑140 (MQ=255)
                                                                                                                        ccGCGGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCa            >  1:5645/1‑140 (MQ=255)
                                                                                                                         cgcgGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCAc           >  1:993371/1‑140 (MQ=255)
                                                                                                                          gcgGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCAcc          <  2:516997/140‑1 (MQ=255)
                                                                                                                          gcgGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCAcc          <  1:570227/140‑1 (MQ=255)
                                                                                                                           cgGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCAccc         >  1:713935/1‑140 (MQ=255)
                                                                                                                           cgGCTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCAccc         >  1:312782/1‑140 (MQ=255)
                                                                                                                              cTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTTCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAgg      <  2:802086/140‑1 (MQ=255)
                                                                                                                              cTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAgg      <  2:12454/140‑1 (MQ=255)
                                                                                                                              cTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAgg      <  1:286029/140‑1 (MQ=255)
                                                                                                                              cTGGAATACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAgg      <  1:1087295/140‑1 (MQ=255)
                                                                                                                                  aaTACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAGGtcat  <  1:975384/140‑1 (MQ=255)
                                                                                                                                  aaTACCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAGGtcat  <  1:30820/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
CACCAGATGTACGAACCGGGTTACCATTTTTGAAGTAAACAGAAGACGTTAACGGAAGATTCACCACCGGATAGTCCGAAGCTGGACTGTCCATTGGCATCAGTAATGGATCAAGTAACTCCGCGGCTGGAATATCCTGCTGTTCAGCTTGCTCAACAAGTTCACGCAGGTGCTCCAGGGTCACCATCCGTTCAACCGGATATTTACTTACCGCCAGACGGCGCAGGTAAATAACATGCGCGCCACAGCCGAGTTTTTCACCCAGGTCAT  >  NC_000913/3311955‑3312224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A