Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,358,292 A→G T1190A (ACT→GCT)  gltB → glutamate synthase subunit GltB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,358,2920AG98.5% 227.8 / ‑6.1 66T1190A (ACT→GCT) gltBglutamate synthase subunit GltB
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (26/39);  total (26/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GAAACCCGCGAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGACTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAGCGCCAGAGCAAAACCTTCTGG  >  NC_000913/3358160‑3358426
                                                                                                                                    |                                                                                                                                      
gAAACCCGCGAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGa                                                                                                                                 >  1:504055/1‑140 (MQ=255)
  aaCCCGCGAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAAc                                                                                                                               <  2:556055/140‑1 (MQ=255)
  aaCCCGCGAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAAc                                                                                                                               <  2:327585/140‑1 (MQ=255)
   aCCCGCGAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAAcc                                                                                                                              <  1:1177406/140‑1 (MQ=255)
       gcgAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCAt                                                                                                                          <  1:120982/140‑1 (MQ=255)
       gcgAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCAt                                                                                                                          <  2:296275/140‑1 (MQ=255)
       gcgAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCAt                                                                                                                          <  2:460786/140‑1 (MQ=255)
       gcgAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCAt                                                                                                                          <  2:501586/140‑1 (MQ=255)
                 ggCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAgg                                                                                                                <  2:182756/140‑1 (MQ=255)
                 ggCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAgg                                                                                                                <  2:1209396/140‑1 (MQ=255)
                 ggCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAgg                                                                                                                <  1:351420/140‑1 (MQ=255)
                 ggCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAgg                                                                                                                <  1:1019150/140‑1 (MQ=255)
                   cacaGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCa                                                                                                              <  2:312825/140‑1 (MQ=255)
                   cacaGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCa                                                                                                              <  1:204447/140‑1 (MQ=255)
                     caGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCAct                                                                                                            >  2:693208/1‑140 (MQ=255)
                     caGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCAct                                                                                                            >  2:284858/1‑140 (MQ=255)
                       gCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCActct                                                                                                          >  2:259979/1‑140 (MQ=255)
                       gCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCActct                                                                                                          >  2:1057861/1‑140 (MQ=255)
                           ggCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTg                                                                                                      >  2:808453/1‑140 (MQ=255)
                           ggCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTg                                                                                                      <  1:145361/140‑1 (MQ=255)
                            gCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTa                                                                                                                   <  2:980489/126‑1 (MQ=255)
                            gCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTa                                                                                                                   >  1:980489/1‑126 (MQ=255)
                             cGTAACACGTCTGGTGGATCTGATTGGTCGCACCGAGCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCa                                                                                                    <  2:337800/140‑1 (MQ=255)
                                      tCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAaaca                                                                                           >  2:494865/1‑140 (MQ=255)
                                      tCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAaaca                                                                                           >  2:882313/1‑140 (MQ=255)
                                       cTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCGCTCTACTGCACCGAAaacaa                                                                                          >  1:730839/1‑140 (MQ=255)
                                       cTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAaacaa                                                                                          >  2:923588/1‑140 (MQ=255)
                                         ggtggATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAAcc                                                                                        <  2:424441/140‑1 (MQ=255)
                                         ggtggATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAAcc                                                                                        <  1:780032/140‑1 (MQ=255)
                                         ggtggATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAAcc                                                                                        <  2:935936/140‑1 (MQ=255)
                                             gATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACccgcc                                                                                    <  1:1146221/140‑1 (MQ=255)
                                               tCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGt                                                                                  >  2:58312/1‑140 (MQ=255)
                                               tCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGt                                                                                  <  2:504055/140‑1 (MQ=255)
                                                 tGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGGCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGACACTCTACTGCACCGAAAACAACCCGCCGttt                                                                                >  2:654997/1‑140 (MQ=255)
                                                   aTTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAAcc                                                                                        <  1:136257/130‑1 (MQ=255)
                                                   aTTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAAcc                                                                                        >  2:136257/1‑130 (MQ=255)
                                                    ttGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGAt                                                                             >  2:1091646/1‑140 (MQ=255)
                                                        tCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAAccag                                                                                      >  2:886353/1‑125 (MQ=255)
                                                        tCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAAccag                                                                                      <  1:886353/127‑3 (MQ=255)
                                                        tCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACg                                                                         >  2:817607/1‑140 (MQ=255)
                                                        tCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACg                                                                         >  1:1183642/1‑140 (MQ=255)
                                                        tCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACg                                                                         <  1:808453/140‑1 (MQ=255)
                                                        tCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACg                                                                         >  1:1144652/1‑140 (MQ=255)
                                                            aCCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCct                                                                     >  2:502894/1‑140 (MQ=255)
                                                             ccGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCctg                                                                    >  1:996573/1‑140 (MQ=255)
                                                             ccGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCctg                                                                    >  2:354497/1‑140 (MQ=255)
                                                                      tgAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAAcgcg                                                           <  1:571954/140‑1 (MQ=255)
                                                                      tgAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAAcgcg                                                           <  1:494865/140‑1 (MQ=255)
                                                                       gAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACgcgc                                                          <  1:882313/140‑1 (MQ=255)
                                                                         aaGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGACTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACAGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAg                                                        <  2:856721/140‑1 (MQ=255)
                                                                          agagCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGt                                                       >  2:146464/1‑140 (MQ=255)
                                                                            agCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTtg                                                     <  1:58312/140‑1 (MQ=255)
                                                                                   cGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAAc                                              <  1:259979/140‑1 (MQ=255)
                                                                                   cGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAAc                                              <  1:1057861/140‑1 (MQ=255)
                                                                                     gTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAg                                            <  1:852505/140‑1 (MQ=255)
                                                                                           ccGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGaaa                                      <  1:284858/140‑1 (MQ=255)
                                                                                                aaaCAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATTCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGtt                                 >  1:168990/1‑140 (MQ=255)
                                                                                                aaaCAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGtt                                 >  1:1094970/1‑140 (MQ=255)
                                                                                                   cagcagAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGt                              <  2:996573/140‑1 (MQ=255)
                                                                                                   cagcagAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGt                              <  1:1091646/140‑1 (MQ=255)
                                                                                                        gAAGCTGGCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATg                         <  1:502894/140‑1 (MQ=255)
                                                                                                             gggCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAgcgc                    <  2:123513/139‑1 (MQ=255)
                                                                                                              ggCGCTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAGCGcc                   >  1:1028756/1‑140 (MQ=255)
                                                                                                                 gcTGTCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAGCGCCaga                <  1:146464/140‑1 (MQ=255)
                                                                                                                     tCGAAGCTGCTGGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAGCGCCAGAGCaa            <  1:370969/140‑1 (MQ=255)
                                                                                                                           ctgctgGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAGCGCCAGAGCAAAACCtt      <  1:817607/140‑1 (MQ=255)
                                                                                                                               tgGAGGCTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAGCGCCAGAGCAAAACCTTCTgg  >  1:389516/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                      
GAAACCCGCGAGCTGATGGCACAGCTTGGCGTAACACGTCTGGTGGATCTGATTGGTCGCACCGACCTGCTGAAAGAGCTGGACGGTTTCACCGCCAAACAGCAGAAGCTGGCGCTGTCGAAGCTGCTGGAGACTGCCGAACCGCATCCAGGTAAGGCACTCTACTGCACCGAAAACAACCCGCCGTTTGATAACGGCCTGCTGAACGCGCAGTTGCTGCAACAGGCGAAACCGTTTGTCGATGAGCGCCAGAGCAAAACCTTCTGG  >  NC_000913/3358160‑3358426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A