Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
260 |
73.5 |
2514320 |
99.3% |
2496719 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,491,126 |
A→G |
V113A (GTT→GCT) |
fic ← |
putative adenosine monophosphate‑‑protein transferase Fic |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,491,126 | 0 | A | G | 100.0%
| 214.1
/ NA
| 61 | V113A (GTT→GCT) | fic | putative adenosine monophosphate‑‑protein transferase Fic |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (29/32); total (29/32) |
ATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCACGCAGTTGCCCTGCCC > NC_000913/3490992‑3491246
|
atCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGa < 2:9309/140‑1 (MQ=255)
cGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATaa > 2:499400/1‑140 (MQ=255)
ggCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAAc < 1:499400/140‑1 (MQ=255)
gCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAAcc > 2:109273/1‑140 (MQ=255)
gCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAAcc > 1:566906/1‑140 (MQ=255)
gCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAAcc > 2:394021/1‑140 (MQ=255)
aaTCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACcttctt < 2:363604/140‑1 (MQ=255)
aaTCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACcttctt > 2:650007/1‑140 (MQ=255)
aaTCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACcttctt < 1:823409/140‑1 (MQ=255)
aaTCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACcttctt < 1:673941/140‑1 (MQ=255)
ccAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTtcctcc < 2:483075/140‑1 (MQ=255)
ccAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTtcctcc < 1:644329/140‑1 (MQ=255)
cAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCa < 2:228812/140‑1 (MQ=255)
tGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATc < 1:1219229/140‑1 (MQ=255)
gCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATcc < 2:439463/140‑1 (MQ=255)
tCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTg < 2:142419/140‑1 (MQ=255)
cGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGc > 2:937746/1‑140 (MQ=255)
aTCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGc > 1:686180/1‑140 (MQ=255)
ccGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCAt < 1:394021/140‑1 (MQ=255)
ccGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCAt < 1:109273/140‑1 (MQ=255)
tgtgCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGcc < 1:393556/140‑1 (MQ=255)
tgtgCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGcc < 2:447534/140‑1 (MQ=255)
tgtgCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGcc < 1:1182007/140‑1 (MQ=255)
cccACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGAtata > 1:592282/1‑140 (MQ=255)
cccGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCa < 2:1057783/140‑1 (MQ=255)
cccGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCa > 2:580475/1‑140 (MQ=255)
ccGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCaa > 2:144995/1‑140 (MQ=255)
gAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGt > 1:1096511/1‑140 (MQ=255)
tGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGaa < 1:144995/140‑1 (MQ=255)
cagcaCGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACg < 2:388933/140‑1 (MQ=255)
gcaCGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGc > 1:332380/1‑140 (MQ=255)
cGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTa < 2:133358/140‑1 (MQ=255)
cGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTa > 2:880206/1‑140 (MQ=255)
cGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTa < 1:937746/140‑1 (MQ=255)
cGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCCTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCaa < 2:354258/123‑1 (MQ=255)
cGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCCTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCaa > 1:354258/1‑123 (MQ=255)
gTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTAt < 1:1210902/140‑1 (MQ=255)
gTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTAt < 2:566906/140‑1 (MQ=255)
tGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATGTAAGCAAAGTGGCAGAACGGCGTATCa < 1:743008/140‑1 (MQ=255)
tGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTACATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCa > 2:806196/1‑140 (MQ=255)
aTTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACATTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCAcc > 2:836290/1‑140 (MQ=255)
tttCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCAccc > 1:673775/1‑140 (MQ=255)
caATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGaa > 2:1239011/1‑122 (MQ=255)
caATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGaa > 2:1254109/1‑122 (MQ=255)
caATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGaa < 1:1239011/122‑1 (MQ=255)
caATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGaa < 1:1254109/122‑1 (MQ=255)
caATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATa > 1:274406/1‑140 (MQ=255)
aGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAata > 1:213864/1‑140 (MQ=255)
aaTGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCa < 2:686180/140‑1 (MQ=255)
aTGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCaa > 1:833260/1‑140 (MQ=255)
aTGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGAGGCAGAACGGCGTATCACCCTGATAAATATCaa > 2:99540/1‑140 (MQ=255)
cgcCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACtt > 2:837332/1‑140 (MQ=255)
cgcCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACtt > 1:1114082/1‑140 (MQ=255)
ccAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCa > 1:7959/1‑140 (MQ=255)
ccAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCa < 1:837332/140‑1 (MQ=255)
cAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCAc > 1:64645/1‑140 (MQ=255)
gCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCACGc > 1:32922/1‑140 (MQ=255)
gCCGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCACGc > 1:958712/1‑140 (MQ=255)
cGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCACGCAg < 1:129432/140‑1 (MQ=255)
cGCTCGACGAACTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCACGCAg < 2:32922/140‑1 (MQ=255)
cGCTCGACGAACTTCGCTCTCTCCAGGCCAACCAGATAACCTTCTTCCTACAGAACCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCATGATAAATATCAACTTCACGCAg < 2:932182/140‑1 (MQ=255)
cTTCGCTTTCTCCAGGCCAGCCAGATAACCTTCTTCCTCCAGATCCTGCATCGGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCACGCAGTtgccctgccc < 1:760673/140‑1 (MQ=255)
|
ATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTTCCTCCAGATCCTGCATCAGGGCATTGCCCTCTTTTTCGATATAAGCAAAGTGGCAGAACGGCGTATCACCCTGATAAATATCAACTTCACGCAGTTGCCCTGCCC > NC_000913/3490992‑3491246
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
