Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,552,586 A→G intergenic (‑113/‑499) malP ← / → malT maltodextrin phosphorylase/DNA‑binding transcriptional activator MalT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,552,5860AG100.0% 314.3 / NA 87intergenic (‑113/‑499)malP/malTmaltodextrin phosphorylase/DNA‑binding transcriptional activator MalT
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/44);  total (43/44)

ATCGTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGT  >  NC_000913/3552450‑3552721
                                                                                                                                        |                                                                                                                                       
aTCGTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCa                                                                                                                                      <  1:768642/140‑1 (MQ=255)
 tCGTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGc                                                                                                                                       >  2:967666/1‑138 (MQ=255)
   gTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAgg                                                                                                                                   <  1:981422/140‑1 (MQ=255)
      aaaaaTAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGaaa                                                                                                                                >  2:523690/1‑140 (MQ=255)
        aaaTAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAAtg                                                                                                                              <  2:1048517/140‑1 (MQ=255)
         aaTAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAAtgt                                                                                                                             <  2:369367/140‑1 (MQ=255)
             ggTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGAtc                                                                                                                         >  2:837381/1‑140 (MQ=255)
                 gtgACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCaa                                                                                                                     <  1:737413/140‑1 (MQ=255)
                 gtgACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCaa                                                                                                                     >  1:644015/1‑140 (MQ=255)
                  tgACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGGTTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAAc                                                                                                                    <  1:615779/140‑1 (MQ=255)
                  tgACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAAc                                                                                                                    <  2:848602/140‑1 (MQ=255)
                  tgACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAAc                                                                                                                    <  2:55333/140‑1 (MQ=255)
                  tgACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAAc                                                                                                                    <  2:52418/140‑1 (MQ=255)
                     cATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCAc                                                                                                                 <  2:989058/140‑1 (MQ=255)
                            gTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAAc                                                                                                                    <  1:363602/130‑1 (MQ=255)
                            gTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAAc                                                                                                                    >  2:363602/1‑130 (MQ=255)
                            gTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGc                                                                                                          <  1:274318/140‑1 (MQ=255)
                              tCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTa                                                                                                        >  1:311510/1‑140 (MQ=255)
                               ccACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAg                                                                                                       >  1:991161/1‑140 (MQ=255)
                                cACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGt                                                                                                      >  2:113402/1‑140 (MQ=255)
                                cACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGt                                                                                                      >  2:479593/1‑140 (MQ=255)
                                 aCTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTg                                                                                                     <  2:1242497/140‑1 (MQ=255)
                                   ttttCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCCAGTGCa                                                                                                   <  1:1024614/140‑1 (MQ=255)
                                        ttAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACca                                                                                              <  1:113402/140‑1 (MQ=255)
                                          aGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACcaca                                                                                            >  1:1057923/1‑140 (MQ=255)
                                             ttttCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGa                                                                                         >  1:176400/1‑140 (MQ=255)
                                               ttCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGAtt                                                                                       <  2:309941/140‑1 (MQ=255)
                                               ttCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGAtt                                                                                       >  2:1148970/1‑140 (MQ=255)
                                                    cacaACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCat                                                                                  <  1:886473/140‑1 (MQ=255)
                                                       aaCGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaa                                                                               >  1:693515/1‑140 (MQ=255)
                                                       aaCGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaa                                                                               >  1:941926/1‑140 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  2:644015/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  2:1057923/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  2:877301/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  2:881871/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  1:1009958/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  2:991161/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             >  1:9451/1‑140 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  1:290732/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             >  1:1219049/1‑140 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  1:523690/140‑1 (MQ=255)
                                                         cGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaat                                                                             <  1:1148970/140‑1 (MQ=255)
                                                            tATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCatcaaatcaa                                                                          >  1:923414/1‑140 (MQ=255)
                                                              tCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATg                                                                        >  1:805705/1‑140 (MQ=255)
                                                              tCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATg                                                                        <  2:923414/140‑1 (MQ=255)
                                                                    gTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATAc                                                                  >  2:1183006/1‑140 (MQ=255)
                                                                      ttGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAg                                                                <  2:941926/140‑1 (MQ=255)
                                                                        gCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAgcg                                                              >  2:1021038/1‑140 (MQ=255)
                                                                        gCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAgcg                                                              <  2:693515/140‑1 (MQ=255)
                                                                            ggCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGa                                                          <  1:837381/140‑1 (MQ=255)
                                                                            ggCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGa                                                          <  2:176400/140‑1 (MQ=255)
                                                                              cTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGaaa                                                        >  1:648031/1‑140 (MQ=255)
                                                                              cTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGAAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGA‑TAGCATCAAATCAATGCAATACAGCGCAGaaaa                                                       >  1:520901/1‑140 (MQ=255)
                                                                               tCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGaaaa                                                       >  1:144311/1‑140 (MQ=255)
                                                                                  aTGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTT‑AAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTg                                                   >  1:262570/1‑140 (MQ=255)
                                                                                  aTGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTT‑AAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTg                                                   >  1:1194288/1‑140 (MQ=255)
                                                                                        aCCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCt                                              >  1:870216/1‑140 (MQ=255)
                                                                                             ccTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAAt                                                      <  2:1178/127‑1 (MQ=255)
                                                                                             ccTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAAt                                                      >  1:1178/1‑127 (MQ=255)
                                                                                             ccTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTg                                         >  1:465799/1‑140 (MQ=255)
                                                                                               tCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGaaa                                                        >  2:1192972/1‑123 (MQ=255)
                                                                                               tCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGaaa                                                        <  1:1192972/123‑1 (MQ=255)
                                                                                                   ccTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCaaaaa                                   >  1:43707/1‑140 (MQ=255)
                                                                                                    cTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCaaaaaa                                  >  2:270729/1‑140 (MQ=255)
                                                                                                    cTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCaaaaaa                                  >  2:477711/1‑140 (MQ=255)
                                                                                                      gCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATg                                >  1:1054066/1‑140 (MQ=255)
                                                                                                       cGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATgg                               >  1:822190/1‑140 (MQ=255)
                                                                                                       cGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATgg                               >  1:396972/1‑140 (MQ=255)
                                                                                                        gggggATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGc                              >  1:447823/1‑140 (MQ=255)
                                                                                                         ggggATTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGcc                             <  2:805705/140‑1 (MQ=255)
                                                                                                             aTTAGGCAGGGAGGAGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTg                         >  1:888853/1‑140 (MQ=255)
                                                                                                                      ggaggaGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTc                >  1:987779/1‑140 (MQ=255)
                                                                                                                      ggaggaGTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTc                >  2:915018/1‑140 (MQ=255)
                                                                                                                       gaggagTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCa               >  1:263855/1‑140 (MQ=255)
                                                                                                                           agTTGCGGGGATGGGCAAGGAAATGAGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCaaaaa           >  2:883600/1‑140 (MQ=255)
                                                                                                                            gTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCaaa             <  2:723875/137‑1 (MQ=255)
                                                                                                                            gTTGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCaaa             >  1:723875/1‑137 (MQ=255)
                                                                                                                              tGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCg        <  1:477711/140‑1 (MQ=255)
                                                                                                                              tGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCg        <  2:144311/140‑1 (MQ=255)
                                                                                                                              tGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCg        <  2:263855/140‑1 (MQ=255)
                                                                                                                              tGCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCg        <  1:270729/140‑1 (MQ=255)
                                                                                                                               gCGGGGATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCgg       <  2:987779/140‑1 (MQ=255)
                                                                                                                                 ggggATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGaa     <  2:9451/140‑1 (MQ=255)
                                                                                                                                  gggATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGc         >  1:494609/1‑135 (MQ=255)
                                                                                                                                  gggATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGc         <  2:494609/135‑1 (MQ=255)
                                                                                                                                   ggATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGA‑TAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGt  <  2:520901/140‑1 (MQ=255)
                                                                                                                                    gATGGGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGt  <  1:971755/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
ATCGTTAAAAATAGGTTGTGACATAGGAGTTCCACTTTTCTTAGATTTTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGAGTTGCGGGGATGAGCAAGGAAATGTGATCTCAACCACTTAAAGCTAGTGCAAACCACAGGATTAGCATCAAATCAATGCAATACAGCGCAGAAAATCTGTATCTAAGTGCAAAAAATGGCCGTTGCGTATTTTCAAAAAGCGGAAGGT  >  NC_000913/3552450‑3552721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A