Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,632,500 T→C K31E (AAA→GAA)  yhiJ ← DUF4049 domain‑containing protein YhiJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,632,5000TC100.0% 598.3 / NA 164K31E (AAA→GAA) yhiJDUF4049 domain‑containing protein YhiJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (80/84);  total (80/84)

Only 100 of 167 total aligned reads displayed.

TTTGTCATCTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTTAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGTTAACATTT  >  NC_000913/3632363‑3632636
                                                                                                                                         |                                                                                                                                        
     cATCTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAg                                                                                                                                   <  2:351155/140‑1 (MQ=255)
        cTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTg                                                                                                                                >  1:737383/1‑140 (MQ=255)
        cTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTg                                                                                                                                <  2:591114/140‑1 (MQ=255)
        cTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTg                                                                                                                                >  2:238030/1‑140 (MQ=255)
         ttGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTgg                                                                                                                               <  2:638722/140‑1 (MQ=255)
         ttGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTgg                                                                                                                               <  2:911850/140‑1 (MQ=255)
              tAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACa                                                                                                                          <  1:584943/140‑1 (MQ=255)
                 aTTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACAt                                                                                                                         >  2:332926/1‑138 (MQ=255)
                 aTTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACAt                                                                                                                         <  1:332926/138‑1 (MQ=255)
                 aTTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGc                                                                                                                       >  2:636861/1‑140 (MQ=255)
                 aTTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGc                                                                                                                       >  2:121512/1‑140 (MQ=255)
                   tgttgGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGctc                                                                                                                     <  2:412424/140‑1 (MQ=255)
                      tgGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGTAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTg                                                                                                                  <  1:355117/140‑1 (MQ=255)
                        gAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCa                                                                                                                <  2:170636/140‑1 (MQ=255)
                           ccGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCa                                                                                                             >  2:489067/1‑140 (MQ=255)
                            cGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGCTCTTCAGTGAAGTTGGTAACATGCTCTTGCAc                                                                                                               >  2:134993/1‑137 (MQ=255)
                               tCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACa                                                                                                                          >  1:839546/1‑123 (MQ=255)
                               tCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACa                                                                                                                          <  2:839546/123‑1 (MQ=255)
                               tCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATc                                                                                                         >  2:481766/1‑140 (MQ=255)
                               tCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATc                                                                                                         >  2:398269/1‑140 (MQ=255)
                                           tcatcTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGAt                                                                                             >  1:52364/1‑140 (MQ=255)
                                                     tttCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTa                                                                                   <  1:1156365/140‑1 (MQ=255)
                                                       tCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACt                                                                                 <  2:478756/140‑1 (MQ=255)
                                                       tCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACt                                                                                 <  1:14827/140‑1 (MQ=255)
                                                            aaCCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGt                                                                            >  2:239468/1‑140 (MQ=255)
                                                                       gCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGtgcctgcc                                                                 <  1:239468/140‑1 (MQ=255)
                                                                        cATTGTCCTGGCAATACTTGATATATCATCATCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCca                                                                >  1:304869/1‑140 (MQ=255)
                                                                        cATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCca                                                                <  1:49127/140‑1 (MQ=255)
                                                                        cATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGAGATTGTCGTTGTACTGTCTTTAGTGCCTGCca                                                                >  1:480668/1‑140 (MQ=255)
                                                                                  gCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAAt                                                      >  1:417948/1‑140 (MQ=255)
                                                                                  gCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAAt                                                      >  1:17172/1‑140 (MQ=255)
                                                                                  gCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAAt                                                      >  1:98210/1‑140 (MQ=255)
                                                                                  gCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAAt                                                      >  2:990400/1‑140 (MQ=255)
                                                                                  gCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAAt                                                      >  1:761932/1‑140 (MQ=255)
                                                                                     aTACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAAtttt                                                   <  1:121512/140‑1 (MQ=255)
                                                                                       aCTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCa                                                 >  2:776827/1‑140 (MQ=255)
                                                                                       aCTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCa                                                 >  2:451612/1‑140 (MQ=255)
                                                                                       aCTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCa                                                 >  1:1066748/1‑140 (MQ=255)
                                                                                       aCTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCa                                                 >  2:1225666/1‑140 (MQ=255)
                                                                                       aCTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCa                                                 <  2:1094892/140‑1 (MQ=255)
                                                                                           gATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATAtt                                             <  2:417948/140‑1 (MQ=255)
                                                                                              atacCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTa                                          >  1:1062268/1‑140 (MQ=255)
                                                                                                atcatcACCTATACCATTTGTAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTAcc                                        <  2:1022287/140‑1 (MQ=255)
                                                                                                atcatcACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTAcc                                        <  1:481766/140‑1 (MQ=255)
                                                                                                atcatcACCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTAcc                                        <  2:1212726/140‑1 (MQ=255)
                                                                                                 tcatcaCCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTG‑AGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTc                                      >  2:538764/1‑140 (MQ=255)
                                                                                                  catcaCCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTc                                      >  2:798704/1‑140 (MQ=255)
                                                                                                  catcaCCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTc                                      >  1:663900/1‑140 (MQ=255)
                                                                                                   atcaCCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTATTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCa                                     >  1:775642/1‑140 (MQ=255)
                                                                                                   atcaCCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCa                                     <  2:737383/140‑1 (MQ=255)
                                                                                                     caCCTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCata                                   >  1:1011688/1‑140 (MQ=255)
                                                                                                       ccTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCAtatt                                 >  1:642263/1‑140 (MQ=255)
                                                                                                       ccTATACCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCAtatt                                 >  1:462468/1‑140 (MQ=255)
                                                                                                          ataCCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATattatt                              >  2:1161159/1‑140 (MQ=255)
                                                                                                           taCCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTAttt                             >  2:892964/1‑140 (MQ=255)
                                                                                                           taCCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTAttt                             >  1:371379/1‑140 (MQ=255)
                                                                                                           taCCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTAttt                             >  1:602385/1‑140 (MQ=255)
                                                                                                           taCCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTAttt                             >  2:247790/1‑140 (MQ=255)
                                                                                                           taCCATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTAttt                             >  2:308993/1‑140 (MQ=255)
                                                                                                              cATTTGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTAcc                          <  1:238030/140‑1 (MQ=255)
                                                                                                               aTTTGCAATATACCCAAACAGTTCTTCAGTG‑AGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        <  1:538764/140‑1 (MQ=255)
                                                                                                                tttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        <  1:390155/140‑1 (MQ=255)
                                                                                                                tttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        <  1:1117658/140‑1 (MQ=255)
                                                                                                                tttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        <  2:512545/140‑1 (MQ=255)
                                                                                                                tttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        >  1:714591/1‑140 (MQ=255)
                                                                                                                tttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        <  2:98210/140‑1 (MQ=255)
                                                                                                                tttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAANTTTCATATTTTACCTCATATTATTTACcgc                        <  1:556687/140‑1 (MQ=255)
                                                                                                                 ttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgcg                       <  2:780730/140‑1 (MQ=255)
                                                                                                                 ttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgcg                       >  1:579194/1‑140 (MQ=255)
                                                                                                                 ttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgcg                       <  2:1151424/140‑1 (MQ=255)
                                                                                                                 ttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        <  1:1239293/139‑1 (MQ=255)
                                                                                                                 ttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        >  2:840596/1‑139 (MQ=255)
                                                                                                                 ttGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACcgc                        <  1:840596/139‑1 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTc                                      >  2:628527/1‑124 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTAcc                          <  1:421425/136‑1 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      <  1:1161159/140‑1 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      <  2:761932/140‑1 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      >  1:275153/1‑140 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      >  2:100989/1‑140 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      <  2:539588/140‑1 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      <  2:714591/140‑1 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      >  1:17355/1‑140 (MQ=255)
                                                                                                                  tGCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      <  1:1186600/140‑1 (MQ=255)
                                                                                                                   gCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAg                     <  1:776827/140‑1 (MQ=255)
                                                                                                                   gCAATATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAg                     <  1:1019506/140‑1 (MQ=255)
                                                                                                                     aaTATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      <  1:208368/137‑1 (MQ=255)
                                                                                                                     aaTATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGa                      >  2:208368/1‑137 (MQ=255)
                                                                                                                     aaTATACCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGa                   <  2:650728/140‑1 (MQ=255)
                                                                                                                         taCCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATAc               <  2:46391/140‑1 (MQ=255)
                                                                                                                         taCCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATAc               <  2:1062268/140‑1 (MQ=255)
                                                                                                                          aCCCAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGGATACa              <  2:579194/140‑1 (MQ=255)
                                                                                                                            ccAAACAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATa            >  2:62349/1‑140 (MQ=255)
                                                                                                                              aaaCAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGt          >  2:196775/1‑140 (MQ=255)
                                                                                                                              aaaCAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGt          <  2:1066748/140‑1 (MQ=255)
                                                                                                                               aaCAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGtt         <  1:892964/140‑1 (MQ=255)
                                                                                                                                aCAGTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGTTa        <  1:798704/140‑1 (MQ=255)
                                                                                                                                   gTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGTTAACa     >  1:631358/1‑140 (MQ=255)
                                                                                                                                   gTTCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGTTAACa     >  1:1040115/1‑140 (MQ=255)
                                                                                                                                    ttcttcAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGTTAACAt    >  2:866546/1‑140 (MQ=255)
                                                                                                                                     tCTTCAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGTTAACAtt   <  1:308993/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TTTGTCATCTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCTCACCGAGCATTGTCCTGGCAATACTTGATATATCATCACCTATACCATTTGCAATATACCCAAACAGTTCTTTAGTGAAGTTGGTAACATGCTCTTGCACCATATCATTTGTTGCGATTGTCGTTGTACTGTCGTTAGTGCCTGCCACAGTTCCAATTTTCATATTTTACCTCATATTATTTACCGCGAGGAATACATAGTTAACATTT  >  NC_000913/3632363‑3632636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A