Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,732,867 A→G T223A (ACG→GCG)  xylG → xylose ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,732,8670AG100.0% 436.9 / NA 123T223A (ACG→GCG) xylGxylose ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (59/64);  total (59/64)

Only 100 of 123 total aligned reads displayed.

GTCGATTTTACTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTACGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGAACATCTGACGGCATGGC  >  NC_000913/3732734‑3733002
                                                                                                                                     |                                                                                                                                       
gTCGATTTTACTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTg                                                                                                                                   >  1:258603/1‑140 (MQ=255)
gTCGATTTTACTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTg                                                                                                                                   >  1:937492/1‑140 (MQ=255)
gTCGATTTTACTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTg                                                                                                                                   >  2:1065875/1‑140 (MQ=255)
 tCGATTTTACTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGa                                                                                                                                  <  1:913184/140‑1 (MQ=255)
     ttttACTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGAtgct                                                                                                                              <  1:159659/140‑1 (MQ=255)
          cTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCgg                                                                                                                         <  1:623827/140‑1 (MQ=255)
                  tattCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTg                                                                                                                 >  1:367051/1‑140 (MQ=255)
                    ttCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGaa                                                                                                               <  1:1051982/140‑1 (MQ=255)
                     tCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAg                                                                                                              <  2:937492/140‑1 (MQ=255)
                       gcgATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGa                                                                                                                        <  1:680454/128‑1 (MQ=255)
                        cgATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACg                                                                                                           <  1:708096/140‑1 (MQ=255)
                        cgATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACg                                                                                                           <  2:825418/140‑1 (MQ=255)
                                aacaGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATc                                                                                                   <  1:823681/140‑1 (MQ=255)
                                 acaGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCa                                                                                                  <  2:379172/140‑1 (MQ=255)
                                  caGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCAc                                                                                                 <  1:800499/140‑1 (MQ=255)
                                    gCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCa                                                                                               >  1:1208359/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAg                                                                                                              >  1:731182/1‑124 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACg                                                                                                           >  2:269851/1‑127 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACg                                                                                                           >  2:694967/1‑127 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACg                                                                                                           <  1:269851/127‑1 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGatat                                                                                                       >  2:711274/1‑131 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGatat                                                                                                       <  1:711274/131‑1 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:947196/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:66053/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  1:492850/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:918669/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:709613/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:1056365/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:1162100/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:467624/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  2:492914/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  1:1160061/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  1:114762/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  1:1063105/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  1:360401/1‑140 (MQ=255)
                                     cACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCat                                                                                              >  1:1125079/1‑140 (MQ=255)
                                      aCGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCatg                                                                                             <  1:1210686/140‑1 (MQ=255)
                                       cGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGa                                                                                                             <  1:175975/123‑1 (MQ=255)
                                       cGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGa                                                                                                             >  2:175975/1‑123 (MQ=255)
                                       cGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGata                                                                                                        <  1:1067746/128‑1 (MQ=255)
                                       cGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGata                                                                                                        >  2:1067746/1‑128 (MQ=255)
                                        ggTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCatgat                                                                                           <  1:947196/140‑1 (MQ=255)
                                          tATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGa                                                                                                          <  1:263996/123‑1 (MQ=255)
                                               ccTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCggg                                                                                    >  2:169673/1‑140 (MQ=255)
                                               ccTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCggg                                                                                    <  1:918669/140‑1 (MQ=255)
                                                cTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGc                                                                                   <  1:467624/140‑1 (MQ=255)
                                                    aTTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCa                                                                                               >  2:738831/1‑124 (MQ=255)
                                                    aTTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCa                                                                                               <  1:738831/124‑1 (MQ=255)
                                                        atatTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTa                                                                           >  2:1108110/1‑140 (MQ=255)
                                                         tatTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTaa                                                                          <  2:1063105/140‑1 (MQ=255)
                                                          atTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAAc                                                                         <  1:1056365/140‑1 (MQ=255)
                                                          atTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAAc                                                                         >  1:925264/1‑140 (MQ=255)
                                                             tCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgc                                                                      >  2:274387/1‑140 (MQ=255)
                                                             tCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgc                                                                      >  1:834833/1‑140 (MQ=255)
                                                             tCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgc                                                                      >  1:1037233/1‑140 (MQ=255)
                                                              cGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgcg                                                                     <  2:1125079/140‑1 (MQ=255)
                                                              cGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgcg                                                                     <  1:124772/140‑1 (MQ=255)
                                                              cGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgcg                                                                     >  1:204703/1‑140 (MQ=255)
                                                              cGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgcg                                                                     >  2:515206/1‑140 (MQ=255)
                                                                cacaAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACcgcg                                                                     <  2:719429/138‑1 (MQ=255)
                                                                cacaAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCt                                                                   >  2:1153601/1‑140 (MQ=255)
                                                                cacaAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCt                                                                   >  1:1241704/1‑140 (MQ=255)
                                                                cacaAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCt                                                                   <  1:610627/140‑1 (MQ=255)
                                                                      cTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTAccc                                                             <  1:66053/140‑1 (MQ=255)
                                                                           cGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATg                                                        <  2:114762/140‑1 (MQ=255)
                                                                             aaGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGaa                                                      <  1:404493/140‑1 (MQ=255)
                                                                             aaGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGaa                                                      <  1:1162100/140‑1 (MQ=255)
                                                                             aaGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGaa                                                      <  2:360401/140‑1 (MQ=255)
                                                                             aaGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGaa                                                      <  2:258603/140‑1 (MQ=255)
                                                                             aaGTCAAAGCGATTTCCAATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGaa                                                      <  1:699187/140‑1 (MQ=255)
                                                                              aGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAAc                                                     <  2:430242/140‑1 (MQ=255)
                                                                               gTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGaa                                                      >  1:896786/1‑138 (MQ=255)
                                                                               gTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGaa                                                      <  2:896786/138‑1 (MQ=255)
                                                                               gTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAAcc                                                    >  1:130318/1‑140 (MQ=255)
                                                                               gTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAAcc                                                    >  2:672675/1‑140 (MQ=255)
                                                                               gTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAAcc                                                    >  2:608187/1‑140 (MQ=255)
                                                                                tCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACca                                                   >  2:119855/1‑140 (MQ=255)
                                                                                 cAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACcac                                                  >  1:708240/1‑140 (MQ=255)
                                                                                  aaaGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACcaca                                                 <  1:169673/140‑1 (MQ=255)
                                                                                  aaaGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACcaca                                                 <  1:1108110/140‑1 (MQ=255)
                                                                                   aaGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACAt                                                >  1:1053188/1‑140 (MQ=255)
                                                                                          ttCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCg                                         <  1:119855/140‑1 (MQ=255)
                                                                                           tCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCgg                                        <  1:409869/140‑1 (MQ=255)
                                                                                           tCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCgg                                        <  2:708240/140‑1 (MQ=255)
                                                                                              gATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGgaga                                     <  1:1066497/140‑1 (MQ=255)
                                                                                               aTACGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGAt                                    <  2:1208359/140‑1 (MQ=255)
                                                                                                  cGATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGaa                                 <  1:906822/140‑1 (MQ=255)
                                                                                                   gATTTGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGaaa                                >  2:204053/1‑140 (MQ=255)
                                                                                                       tGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATAtt                            <  2:1175435/140‑1 (MQ=255)
                                                                                                       tGCGTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATAtt                            <  2:925264/140‑1 (MQ=255)
                                                                                                          gTTATTCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACg                         <  2:326259/140‑1 (MQ=255)
                                                                                                              ttCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATTCCACCGGAGATGAAATATTACGTAtt                     <  2:834833/140‑1 (MQ=255)
                                                                                                              ttCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTAtt                     <  1:1171197/140‑1 (MQ=255)
                                                                                                               tCGCGACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTg                    >  2:645825/1‑140 (MQ=255)
                                                                                                                 gcgACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGaa                  <  1:204053/140‑1 (MQ=255)
                                                                                                                 gcgACGGACAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGaa                  <  1:492914/140‑1 (MQ=255)
                                                                                                                        aCAGCACATTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGAACATCTGa           <  1:672675/140‑1 (MQ=255)
                                                                                                                            cacaTTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGAACATCTGACggc       >  1:767545/1‑140 (MQ=255)
                                                                                                                             acaTTGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGAACATCTGACggca      >  2:1063207/1‑140 (MQ=255)
                                                                                                                                 tGGTGCGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGAACATCTGACggcatggc  <  1:515206/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                       
GTCGATTTTACTGGATATTATTCGCGATCTACAACAGCACGGTATCGCCTGTATTTATATTTCGCACAAACTCAACGAAGTCAAAGCGATTTCCGATACGATTTGCGTTATTCGCGACGGACAGCACATTGGTACGCGTGATGCTGCCGGAATGAGTGAAGACGATATTATCACCATGATGGTCGGGCGAGAGTTAACCGCGCTTTACCCTAATGAACCACATACCACCGGAGATGAAATATTACGTATTGAACATCTGACGGCATGGC  >  NC_000913/3732734‑3733002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A