Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,926,512	A→G	intergenic (‑57/+33)	mioC ← / ← asnC	flavoprotein MioC/DNA‑binding transcriptional dual regulator AsnC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,926,512	0	A	G	100.0%	450.6 / NA	124	intergenic (‑57/+33)	mioC/asnC	flavoprotein MioC/DNA‑binding transcriptional dual regulator AsnC
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (69/55); total (69/55)

Only 100 of 124 total aligned reads displayed.

TTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGG  >  NC_000913/3926375‑3926647

 tCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCt                                                                                                                                      >  1:920304/1‑140 (MQ=255)

    aGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCtgtg                                                                                                                                   <  2:595436/140‑1 (MQ=255)

     gCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTgg                                                                                                                                  <  2:1066128/140‑1 (MQ=255)

         ttCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGaaaa                                                                                                                              >  2:206511/1‑140 (MQ=255)

             gCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTAt                                                                                                                          <  2:856450/140‑1 (MQ=255)

                 ggTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGaa                                                                                                                                >  1:667459/1‑130 (MQ=255)

                     ttCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTaa                                                                                                                  <  2:920304/140‑1 (MQ=255)

                       cTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTaaaa                                                                                                                <  1:852112/140‑1 (MQ=255)

                          cTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAg                                                                                                             >  1:566614/1‑140 (MQ=255)

                             cATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCg                                                                                                          <  1:752583/140‑1 (MQ=255)

                             cATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCg                                                                                                          <  2:1034720/140‑1 (MQ=255)

                             cATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCg                                                                                                          >  2:752583/1‑140 (MQ=255)

                                atTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATc                                                                                                       <  2:271112/140‑1 (MQ=255)

                                 ttCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCa                                                                                                      <  2:563344/140‑1 (MQ=255)

                                  tCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAg                                                                                                     >  1:103776/1‑140 (MQ=255)

                                  tCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAg                                                                                                     >  1:4538/1‑140 (MQ=255)

                                    ggCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAggg                                                                                                   >  2:702897/1‑140 (MQ=255)

                                    ggCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAggg                                                                                                   >  2:91373/1‑140 (MQ=255)

                                     gCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGAAAAAGTATGGGATTAAAAAAGCCGATCAGGGc                                                                                                  <  2:1200142/140‑1 (MQ=255)

                                       aCCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAg                                                                                                             <  1:723694/127‑1 (MQ=255)

                                       aCCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAg                                                                                                             >  2:723694/1‑127 (MQ=255)

                                       aCCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCtt                                                                                                <  1:1122413/140‑1 (MQ=255)

                                           ccgAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATg                                                                                            <  1:962850/140‑1 (MQ=255)

                                           ccgAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATg                                                                                            <  1:1018858/140‑1 (MQ=255)

                                           ccgAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATg                                                                                            <  2:1006461/140‑1 (MQ=255)

                                                ggTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACg                                                                                       <  1:921985/140‑1 (MQ=255)

                                                ggTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACg                                                                                       >  1:1093430/1‑140 (MQ=255)

                                                   gctgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATg                                                                                            <  1:344466/132‑1 (MQ=255)

                                                   gctgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATg                                                                                            >  2:344466/1‑132 (MQ=255)

                                                     tgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGa                                                                                  >  2:870499/1‑140 (MQ=255)

                                                                    tGATATCTGCCATAAACCGCCGCCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGa                                                                   <  2:990477/140‑1 (MQ=255)

                                                                    tGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGa                                                                   >  2:514158/1‑140 (MQ=255)

                                                                     gATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCggg                                                                             <  2:848164/129‑1 (MQ=255)

                                                                     gATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCggg                                                                             >  1:848164/1‑129 (MQ=255)

                                                                       tatCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGa                                                                >  2:1033038/1‑140 (MQ=255)

                                                                            gCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAAt                                                           >  1:314010/1‑140 (MQ=255)

                                                                            gCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAAt                                                           >  2:982692/1‑140 (MQ=255)

                                                                            gCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAAt                                                           >  2:40527/1‑140 (MQ=255)

                                                                            gCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAAt                                                           >  1:186651/1‑140 (MQ=255)

                                                                             ccATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATg                                                          >  2:635540/1‑140 (MQ=255)

                                                                                tAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCa                                                                      >  1:171833/1‑125 (MQ=255)

                                                                                 aaaCCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGtct                                                       >  1:623432/1‑139 (MQ=255)

                                                                                 aaaCCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGtct                                                       <  2:623432/139‑1 (MQ=255)

                                                                                  aaCCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCg                                                     >  2:977504/1‑140 (MQ=255)

                                                                                       ccACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGa                                                >  2:546908/1‑140 (MQ=255)

                                                                                       ccACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGa                                                >  1:539169/1‑140 (MQ=255)

                                                                                        cACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGAc                                               <  2:539169/140‑1 (MQ=255)

                                                                                                     agTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCaa                                  >  2:352754/1‑140 (MQ=255)

                                                                                                     agTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCaa                                  >  2:985369/1‑140 (MQ=255)

                                                                                                     agTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCaa                                  >  2:1231852/1‑140 (MQ=255)

                                                                                                       tGGCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAAtt                                >  1:366671/1‑140 (MQ=255)

                                                                                                         gCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGt                              >  2:685643/1‑140 (MQ=255)

                                                                                                         gCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGt                              >  1:165682/1‑140 (MQ=255)

                                                                                                         gCGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGt                              >  2:796037/1‑140 (MQ=255)

                                                                                                          cGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGtt                             <  2:903105/140‑1 (MQ=255)

                                                                                                          cGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGtt                             >  1:893621/1‑140 (MQ=255)

                                                                                                          cGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGtt                             >  2:106419/1‑140 (MQ=255)

                                                                                                          cGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGtt                             >  2:292113/1‑140 (MQ=255)

                                                                                                          cGTATTGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGtt                             >  1:545775/1‑140 (MQ=255)

                                                                                                              ttGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGa                         <  1:664602/140‑1 (MQ=255)

                                                                                                              ttGTACGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGa                         <  1:482719/140‑1 (MQ=255)

                                                                                                                   cGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttg                    >  2:1221693/1‑140 (MQ=255)

                                                                                                                   cGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttg                    <  2:887692/140‑1 (MQ=255)

                                                                                                                   cGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttg                    <  1:515514/140‑1 (MQ=255)

                                                                                                                   cGCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttg                    <  1:91373/140‑1 (MQ=255)

                                                                                                                    gCTGTGAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttgt                   <  1:737609/140‑1 (MQ=255)

                                                                                                                      tgtgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttgttg                 >  1:214522/1‑140 (MQ=255)

                                                                                                                      tgtgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGAAGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttgttg                 >  2:1119999/1‑140 (MQ=255)

                                                                                                                       gtgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGa                <  1:1231852/140‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTATGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATc                       <  2:253675/132‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTATGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATc                       >  1:253675/1‑132 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAGTTTCATCAATTGTTTGGATCTTGTTGAt               >  2:79940/1‑140 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGa                         >  2:1212979/1‑130 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGa                         <  1:1212979/130‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATc                       >  2:285904/1‑132 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATc                       <  1:285904/132‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCttg                    >  1:817380/1‑135 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               <  2:125861/140‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               >  1:1098787/1‑140 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               >  1:593933/1‑140 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               <  1:882950/140‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               >  1:1187010/1‑140 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               <  1:446416/140‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               <  2:186651/140‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               >  2:748153/1‑140 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               >  2:236765/1‑140 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               <  1:236765/140‑1 (MQ=255)

                                                                                                                        tgAACGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGAt               >  2:411113/1‑140 (MQ=255)

                                                                                                                           aCGCGTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAg            >  1:366428/1‑140 (MQ=255)

                                                                                                                            cgcgTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGt           <  2:214522/140‑1 (MQ=255)

                                                                                                                            cgcgTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGt           <  2:66966/140‑1 (MQ=255)

                                                                                                                            cgcgTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGt           <  1:635540/140‑1 (MQ=255)

                                                                                                                              cgTTGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTAc         <  1:165820/140‑1 (MQ=255)

                                                                                                                                 tGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATg      <  2:453357/140‑1 (MQ=255)

                                                                                                                                 tGGGATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATg      <  2:603597/140‑1 (MQ=255)

                                                                                                                                  gggATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGt           <  1:4347/134‑1 (MQ=255)

                                                                                                                                  gggATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGc     >  2:850872/1‑140 (MQ=255)

                                                                                                                                  gggATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGc     >  1:910538/1‑140 (MQ=255)

                                                                                                                                  gggATCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGc     >  1:1167251/1‑140 (MQ=255)

                                                                                                                                     aTCTGCCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTgg  <  2:1093430/140‑1 (MQ=255)

TTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGG  >  NC_000913/3926375‑3926647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A