Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,254,975 G→A P498S (CCG→TCG)  plsB ← glycerol‑3‑phosphate 1‑O‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,254,9750GA100.0% 399.3 / NA 113P498S (CCG→TCG) plsBglycerol‑3‑phosphate 1‑O‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (64/49);  total (64/49)

Only 100 of 113 total aligned reads displayed.

TCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAG  >  NC_000913/4254839‑4255110
                                                                                                                                        |                                                                                                                                       
tCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACg                                                                                                                                      <  2:1156483/140‑1 (MQ=255)
 cgcgGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGc                                                                                                                                     >  1:392822/1‑140 (MQ=255)
 cgcgGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGc                                                                                                                                     >  1:312512/1‑140 (MQ=255)
      gtgagtgaGCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGc                                                                                                                                <  2:411604/140‑1 (MQ=255)
       tgagtgagCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCt                                                                                                                               <  2:815534/140‑1 (MQ=255)
          gtgagCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCg                                                                                                                            <  1:922381/140‑1 (MQ=255)
          gtgagCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCg                                                                                                                            >  2:1188423/1‑140 (MQ=255)
            gagCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGAt                                                                                                                          <  2:635079/140‑1 (MQ=255)
              gcgcTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATgg                                                                                                                        >  2:944669/1‑140 (MQ=255)
              gcgcTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATgg                                                                                                                        >  1:30694/1‑140 (MQ=255)
                  tGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATc                                                                                                                    >  1:813066/1‑140 (MQ=255)
                   gACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCg                                                                                                                   >  2:1140172/1‑140 (MQ=255)
                    aCGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGa                                                                                                                  >  1:468418/1‑140 (MQ=255)
                     cGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGAt                                                                                                                 <  1:77873/140‑1 (MQ=255)
                     cGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGAt                                                                                                                 <  2:1183185/140‑1 (MQ=255)
                        gATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGa                                                                                                              >  2:816057/1‑140 (MQ=255)
                              aGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACg                                                                                                        <  2:312512/140‑1 (MQ=255)
                              aGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACg                                                                                                        <  2:392822/140‑1 (MQ=255)
                              aGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACg                                                                                                        <  2:468418/140‑1 (MQ=255)
                              aGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACg                                                                                                        >  1:827808/1‑140 (MQ=255)
                              aGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACC‑‑GCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGcc                                                                                                      >  2:251243/1‑140 (MQ=255)
                               gTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGGCGAACGCACCGCTTCGATGGGATCGATAGATTCACGc                                                                                                       <  1:1112156/140‑1 (MQ=255)
                               gTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGc                                                                                                       <  2:959359/140‑1 (MQ=255)
                               gTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGc                                                                                                       <  1:398456/140‑1 (MQ=255)
                               gTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGc                                                                                                       <  2:1251948/140‑1 (MQ=255)
                                   cgcAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGt                                                                                                   >  2:608334/1‑140 (MQ=255)
                                        tACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACg                                                                                                        <  1:978364/130‑1 (MQ=255)
                                        tACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACg                                                                                                        >  2:1012214/1‑130 (MQ=255)
                                        tACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACg                                                                                                        <  1:1012214/130‑1 (MQ=255)
                                        tACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGt                                                                                              <  1:419273/140‑1 (MQ=255)
                                         aCAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTa                                                                                             <  1:138278/140‑1 (MQ=255)
                                             cacaGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         <  2:30694/140‑1 (MQ=255)
                                             cacaGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         >  1:628074/1‑140 (MQ=255)
                                             cacaGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         <  2:827808/140‑1 (MQ=255)
                                             cacaGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         <  1:764106/140‑1 (MQ=255)
                                             cacaGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         >  1:126184/1‑140 (MQ=255)
                                             cacaGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACAGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         <  2:706719/140‑1 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         >  1:764378/1‑135 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         <  2:764378/135‑1 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         >  2:450495/1‑135 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATg                                                                                         <  1:450495/135‑1 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGt                                                                                    >  2:1181428/1‑140 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGt                                                                                    >  2:444898/1‑140 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGt                                                                                    >  2:364419/1‑140 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGt                                                                                    >  1:1020199/1‑140 (MQ=255)
                                                  gTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCCTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGt                                                                                    >  2:937283/1‑140 (MQ=255)
                                                     cATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTaa                                                                                 >  1:278184/1‑140 (MQ=255)
                                                     cATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTaa                                                                                 <  1:338810/140‑1 (MQ=255)
                                                     cATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTaa                                                                                 >  1:842120/1‑140 (MQ=255)
                                                              tGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGtca                                                                        >  2:316174/1‑140 (MQ=255)
                                                                 cgcgCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGtcatca                                                                     <  1:1181428/140‑1 (MQ=255)
                                                                         cGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCAtt                                                             >  1:1123852/1‑140 (MQ=255)
                                                                            tgttAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGt                                                          <  1:316174/140‑1 (MQ=255)
                                                                                  tGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCg                                                    <  2:279528/140‑1 (MQ=255)
                                                                                      tACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGaa                                                  >  1:235102/1‑138 (MQ=255)
                                                                                      tACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGaa                                                  <  2:235102/138‑1 (MQ=255)
                                                                                      tACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGt                                                <  2:278184/140‑1 (MQ=255)
                                                                                      tACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCACTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGt                                                >  2:926416/1‑140 (MQ=255)
                                                                                        ccATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTg                                              >  2:1107868/1‑140 (MQ=255)
                                                                                            cAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGt                                          >  2:107109/1‑140 (MQ=255)
                                                                                            cAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGt                                          >  2:300884/1‑140 (MQ=255)
                                                                                            cAGATCGGCAGCAATATGATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATCGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGt                                          <  2:1123852/140‑1 (MQ=255)
                                                                                             aGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCg                                                    >  2:87945/1‑129 (MQ=255)
                                                                                             aGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCg                                                    <  1:87945/129‑1 (MQ=255)
                                                                                                tCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACg                                           <  1:456789/135‑1 (MQ=255)
                                                                                                tCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAAcc                                      <  1:937283/140‑1 (MQ=255)
                                                                                                 cgacagcaATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGt                                                <  2:1066458/126‑1 (MQ=255)
                                                                                                 cgacagcaATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGt                                                >  1:1066458/4‑129 (MQ=255)
                                                                                                 cGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAAccc                                     >  1:727763/1‑140 (MQ=255)
                                                                                                 cGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCACTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAAccc                                     <  1:926416/140‑1 (MQ=255)
                                                                                                   gcagcaATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAAcc                                      >  1:237843/1‑137 (MQ=255)
                                                                                                   gcagcaATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTg                                   >  2:29096/1‑140 (MQ=255)
                                                                                                   gcagcaATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTg                                   >  2:912146/1‑140 (MQ=255)
                                                                                                   gcagcaATATTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTg                                   >  1:710920/1‑140 (MQ=255)
                                                                                                         atatTATTGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCgag                             >  1:1095265/1‑140 (MQ=255)
                                                                                                             tattGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTa                         >  2:736857/1‑140 (MQ=255)
                                                                                                              attGACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTAc                        <  1:107109/140‑1 (MQ=255)
                                                                                                                 gACCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACg                       <  2:479136/138‑1 (MQ=255)
                                                                                                                  aCCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAg                    <  1:300884/140‑1 (MQ=255)
                                                                                                                  aCCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAg                    <  2:485313/140‑1 (MQ=255)
                                                                                                                  aCCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAg                    <  1:736857/140‑1 (MQ=255)
                                                                                                                  aCCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAg                    >  2:664823/1‑140 (MQ=255)
                                                                                                                  aCCGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAg                    <  1:1188423/140‑1 (MQ=255)
                                                                                                                    cGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGAc                                 >  1:939708/1‑125 (MQ=255)
                                                                                                                    cGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGAc                                 <  2:939708/125‑1 (MQ=255)
                                                                                                                    cGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgct                  >  1:1089047/1‑140 (MQ=255)
                                                                                                                    cGTCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACAT‑CTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgctt                 >  2:731384/1‑140 (MQ=255)
                                                                                                                      tCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgcttg                >  2:48459/1‑140 (MQ=255)
                                                                                                                      tCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgcttg                >  1:26481/1‑140 (MQ=255)
                                                                                                                      tCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgcttg                >  2:412750/1‑140 (MQ=255)
                                                                                                                      tCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgcttg                >  2:818015/1‑140 (MQ=255)
                                                                                                                      tCGGCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgcttg                >  1:313813/1‑140 (MQ=255)
                                                                                                                        ggCGTTAACCATGCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAgcttgct              >  1:314070/1‑140 (MQ=255)
                                                                                                                                    gCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACcgcg     >  1:305951/1‑137 (MQ=255)
                                                                                                                                    gCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACcgcg     <  2:305951/137‑1 (MQ=255)
                                                                                                                                    gCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCgcag  >  2:846975/1‑140 (MQ=255)
                                                                                                                                    gCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCgcag  >  1:446998/1‑140 (MQ=255)
                                                                                                                                    gCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCgcag  >  2:1222078/1‑140 (MQ=255)
                                                                                                                                    gCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCgcag  >  2:103487/1‑140 (MQ=255)
                                                                                                                                    gCCGAACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCgcag  >  1:884855/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCAGTACAGCACAGGTTCATGGCGTTTGCCGCGCCTGCGTTGTTAATGCGTACCATCAGATCGGCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAG  >  NC_000913/4254839‑4255110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A