Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,394,057	G→A	P4L (CCC→CTC)	queG ←	epoxyqueuosine reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,394,057	0	G	A	100.0%	327.2 / NA	92	P4L (CCC→CTC)	queG	epoxyqueuosine reductase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (41/51); total (41/51)

GTATTGTTTGTCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGGGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTCACACTCTATGAGCTGATG  >  NC_000913/4393924‑4394191

gTATTGTTTGTCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTg                                                                                                                                  <  2:921984/140‑1 (MQ=255)

     gtttgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATg                                                                                                                             <  1:368046/140‑1 (MQ=255)

     gtttgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATg                                                                                                                             <  1:174457/140‑1 (MQ=255)

       ttgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGAc                                                                                                                           <  2:891177/140‑1 (MQ=255)

       ttgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGAc                                                                                                                           <  2:714147/140‑1 (MQ=255)

        tgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATg                                                                                                                             >  1:804373/1‑137 (MQ=255)

        tgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATg                                                                                                                             <  2:804373/137‑1 (MQ=255)

        tgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACg                                                                                                                          >  1:622598/1‑140 (MQ=255)

        tgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACg                                                                                                                          <  2:630294/140‑1 (MQ=255)

        tgtCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACg                                                                                                                          <  1:1018285/140‑1 (MQ=255)

          tCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGa                                                                                                                        <  1:1073523/140‑1 (MQ=255)

          tCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGa                                                                                                                        >  1:71233/1‑140 (MQ=255)

          tCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGa                                                                                                                        <  2:1208590/140‑1 (MQ=255)

          tCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGa                                                                                                                        >  2:729081/1‑140 (MQ=255)

             aGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCa                                                                                                                     <  1:1189643/140‑1 (MQ=255)

               ccATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATa                                                                                                                   <  2:630042/140‑1 (MQ=255)

               ccATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATa                                                                                                                   >  1:656553/1‑140 (MQ=255)

               ccATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATa                                                                                                                   <  1:277989/140‑1 (MQ=255)

                    cTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATg                                                                                                              <  2:656553/140‑1 (MQ=255)

                        cAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACg                                                                                                                          >  2:509005/1‑124 (MQ=255)

                        cAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACg                                                                                                                          <  1:509005/124‑1 (MQ=255)

                         aGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATgaagaa                                                                                                         >  2:542948/1‑140 (MQ=255)

                             tGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCGGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAc                                                                                                     >  2:1041693/1‑140 (MQ=255)

                             tGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAc                                                                                                     >  1:1089867/1‑140 (MQ=255)

                              gggCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAcc                                                                                                    >  1:1061910/1‑140 (MQ=255)

                               ggCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAccc                                                                                                   <  1:538726/140‑1 (MQ=255)

                               ggCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAccc                                                                                                   <  1:778477/140‑1 (MQ=255)

                               ggCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAccc                                                                                                   <  2:622598/140‑1 (MQ=255)

                               ggCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAccc                                                                                                   >  2:654429/1‑140 (MQ=255)

                                gCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAcccc                                                                                                  >  1:975962/1‑140 (MQ=255)

                                gCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAAcccc                                                                                                  <  2:779422/140‑1 (MQ=255)

                                   cGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTa                                                                                               >  1:1040844/1‑140 (MQ=255)

                                    ggACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTaa                                                                                              <  1:654429/140‑1 (MQ=255)

                                    ggACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTaa                                                                                              <  1:996246/140‑1 (MQ=255)

                                     gACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGaaa                                                                                                        >  1:1072485/1‑129 (MQ=255)

                                     gACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGaaa                                                                                                        <  2:1072485/129‑1 (MQ=255)

                                      aCTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGt                                                                                            <  1:229325/140‑1 (MQ=255)

                                      aCTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGt                                                                                            <  1:446540/140‑1 (MQ=255)

                                              agaTCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACcaca                                                                                    <  1:491892/140‑1 (MQ=255)

                                                     tatcggtaATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACcacaca                                                                                  >  1:1162992/1‑135 (MQ=255)

                                                     tatcggtaATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACcacaca                                                                                  <  2:1162992/135‑1 (MQ=255)

                                                         ggtaATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGt                                                                         <  2:693293/140‑1 (MQ=255)

                                                          gtaATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTa                                                                        >  1:1228761/1‑140 (MQ=255)

                                                            aaTACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACg                                                                      <  1:542948/140‑1 (MQ=255)

                                                            aaTACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACg                                                                      <  2:975962/140‑1 (MQ=255)

                                                               acctacctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCcg                                                                   <  1:729606/140‑1 (MQ=255)

                                                                   acctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCcgacga                                                               >  1:757975/1‑140 (MQ=255)

                                                                   acctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCcgacga                                                               >  1:289556/1‑140 (MQ=255)

                                                                   acctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCcgacga                                                               >  2:1169911/1‑140 (MQ=255)

                                                                   acctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCcgacga                                                               >  2:1160219/1‑140 (MQ=255)

                                                                    cctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACg                                                                      >  1:853539/1‑132 (MQ=255)

                                                                    cctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACg                                                                      <  2:853539/132‑1 (MQ=255)

                                                                    cctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGat                                                              >  2:921493/1‑140 (MQ=255)

                                                                    cctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGat                                                              <  1:938347/140‑1 (MQ=255)

                                                                    cctGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGat                                                              >  1:636835/1‑140 (MQ=255)

                                                                        ctgAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTa                                                                        <  2:312429/126‑1 (MQ=255)

                                                                        ctgAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTa                                                                        >  1:312429/1‑126 (MQ=255)

                                                                        ctgAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATcc                                                          >  1:576050/1‑140 (MQ=255)

                                                                        ctgAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATcc                                                          >  2:1171607/1‑140 (MQ=255)

                                                                         tgAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATccg                                                         >  1:886937/1‑140 (MQ=255)

                                                                         tgAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATccg                                                         >  1:1072212/1‑140 (MQ=255)

                                                                          gAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATccgc                                                        >  1:679828/1‑140 (MQ=255)

                                                                               cccAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCgg                                                   >  2:65811/1‑140 (MQ=255)

                                                                                              cACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAAcgc                                            <  1:325720/132‑1 (MQ=255)

                                                                                              cACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAAcgc                                            >  2:325720/1‑132 (MQ=255)

                                                                                              cACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAggcggc                                    >  1:441925/1‑140 (MQ=255)

                                                                                              cACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAggc                                       <  1:858362/137‑1 (MQ=255)

                                                                                              cACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAggc                                       >  2:858362/1‑137 (MQ=255)

                                                                                                   tttAATTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGAtg                               >  1:852188/1‑140 (MQ=255)

                                                                                                       aTTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCt                           <  2:289556/140‑1 (MQ=255)

                                                                                                       aTTTTTTGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCt                           <  1:1160219/140‑1 (MQ=255)

                                                                                                           tttGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTgggg                       <  1:1169911/140‑1 (MQ=255)

                                                                                                           tttGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTgggg                       >  2:837164/1‑140 (MQ=255)

                                                                                                            ttGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGc                      <  1:729081/140‑1 (MQ=255)

                                                                                                             tGCGCTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCt                     <  1:65811/140‑1 (MQ=255)

                                                                                                               cgcTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTca                   <  1:921493/140‑1 (MQ=255)

                                                                                                                gcTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcac                  <  1:518159/140‑1 (MQ=255)

                                                                                                                gcTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcac                  <  2:34012/140‑1 (MQ=255)

                                                                                                                gcTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcac                  <  2:852188/140‑1 (MQ=255)

                                                                                                                 cTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcaca                 <  2:1228761/140‑1 (MQ=255)

                                                                                                                 cTAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcaca                 <  1:241275/140‑1 (MQ=255)

                                                                                                                  tAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcaca                 >  2:1135300/1‑139 (MQ=255)

                                                                                                                  tAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcaca                 <  1:1135300/139‑1 (MQ=255)

                                                                                                                  tAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcaca                 <  1:1195063/139‑1 (MQ=255)

                                                                                                                  tAACTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcaca                 >  2:1195063/1‑139 (MQ=255)

                                                                                                                     cTGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTCACActct             <  2:886937/140‑1 (MQ=255)

                                                                                                                      tGATTGAGATCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTCACACTCTa            <  1:1041693/140‑1 (MQ=255)

                                                                                                                              aTCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTCACACTCTATGAGCTGa    >  1:489507/1‑140 (MQ=255)

                                                                                                                              aTCGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTCACACTCTATGAGCTGa    >  1:450855/1‑140 (MQ=255)

                                                                                                                                cGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcac                  <  1:1219308/124‑1 (MQ=255)

                                                                                                                                cGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTcac                  >  2:1219308/1‑124 (MQ=255)

                                                                                                                                cGAGGAGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTCACACTCTATGAGCTGATg  >  1:129737/1‑140 (MQ=255)

GTATTGTTTGTCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGGGCTCTGACATGACGGACCATACAATGAAGAAAAACCCCGTAAGTATACCACACACCGTCTGGTACGCCGACGATATCCGCCGCGGAGAACGCGAGGCGGCAGATGTGCTGGGGCTCACACTCTATGAGCTGATG  >  NC_000913/4393924‑4394191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A