Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,394,686	A→G	N487S (AAC→AGC)	mppA →	murein tripeptide ABC transporter periplasmic binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,394,686	0	A	G	100.0%	255.1 / NA	72	N487S (AAC→AGC)	mppA	murein tripeptide ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (36/36); total (36/36)

TGAACCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAACGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTAT  >  NC_000913/1394549‑1394821

tGAACCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGcg                                                                                                                                       <  1:785899/140‑1 (MQ=255)

  aaCCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGcgcg                                                                                                                                     >  1:728023/1‑140 (MQ=255)

  aaCCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGcgcg                                                                                                                                     >  2:28418/1‑140 (MQ=255)

  aaCCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGcgcg                                                                                                                                     >  2:163215/1‑140 (MQ=255)

  aaCCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGcgcg                                                                                                                                     >  2:200416/1‑140 (MQ=255)

  aaCCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGcgcg                                                                                                                                     >  2:202075/1‑140 (MQ=255)

  aaCCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGcgcg                                                                                                                                     >  2:226368/1‑140 (MQ=255)

    cccTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGc                                                                                                                                   >  1:879896/1‑140 (MQ=255)

    cccTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGc                                                                                                                                   >  1:267327/1‑140 (MQ=255)

                  gACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCa                                                                                                                     <  1:28418/140‑1 (MQ=255)

                   aCATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCAt                                                                                                                    <  1:302545/140‑1 (MQ=255)

                   aCATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCAt                                                                                                                    <  2:728023/140‑1 (MQ=255)

                      ttattaACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCa                                                                                                                     >  2:291387/1‑136 (MQ=255)

                      ttattaACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCa                                                                                                                     <  1:291387/136‑1 (MQ=255)

                       tattaACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGag                                                                                                                <  2:723836/140‑1 (MQ=255)

                       tattaACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGag                                                                                                                <  1:226368/140‑1 (MQ=255)

                        attaACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGagc                                                                                                               <  1:822373/140‑1 (MQ=255)

                        attaACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGagc                                                                                                               >  1:169358/1‑140 (MQ=255)

                               tCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCAcc                                                                                                        >  1:753961/1‑140 (MQ=255)

                                   cGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGAtt                                                                                                    >  2:795276/1‑140 (MQ=255)

                                   cGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGAtt                                                                                                    >  2:811273/1‑140 (MQ=255)

                                   cGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGAtt                                                                                                    >  1:739397/1‑140 (MQ=255)

                                       ttCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGCTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCAc                                                                                                <  1:772243/140‑1 (MQ=255)

                                        tCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCAcc                                                                                               >  1:360458/1‑140 (MQ=255)

                                        tCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCAcc                                                                                               >  2:510071/1‑140 (MQ=255)

                                               atatTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTAt                                                                                        <  2:169358/140‑1 (MQ=255)

                                               atatTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTAt                                                                                        <  2:267327/140‑1 (MQ=255)

                                               atatTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTAt                                                                                        <  2:879896/140‑1 (MQ=255)

                                               atatTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTAt                                                                                        <  2:739397/140‑1 (MQ=255)

                                                    tCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAata                                                                                   >  1:594530/1‑140 (MQ=255)

                                                                aaTCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATGCCAATGGACg                                                                       <  2:594530/140‑1 (MQ=255)

                                                                  tCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGAt                                                                     >  2:462308/1‑140 (MQ=255)

                                                                  tCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGAt                                                                     >  1:455033/1‑140 (MQ=255)

                                                                   ccGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATAc                                                                                >  1:290368/1‑128 (MQ=255)

                                                                   ccGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATAc                                                                                <  2:290368/128‑1 (MQ=255)

                                                                    cGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGAt                                                                     <  1:647696/138‑1 (MQ=255)

                                                                    cGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGAt                                                                     >  2:647696/1‑138 (MQ=255)

                                                                    cGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTa                                                                   >  2:561692/1‑140 (MQ=255)

                                                                    cGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTa                                                                   >  2:494108/1‑140 (MQ=255)

                                                                       cATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGAAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATc                                                                >  2:128149/1‑140 (MQ=255)

                                                                            gACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGcc                                                           >  2:843874/1‑140 (MQ=255)

                                                                                 aGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCg                                                          <  2:54765/136‑1 (MQ=255)

                                                                                 aGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCg                                                          >  1:54765/1‑136 (MQ=255)

                                                                                 aGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGc                                                      >  2:435655/1‑140 (MQ=255)

                                                                                   ttCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTg                                                    <  2:213036/140‑1 (MQ=255)

                                                                                   ttCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTg                                                    >  1:823813/1‑140 (MQ=255)

                                                                                     cTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGaa                                                  >  2:182310/1‑140 (MQ=255)

                                                                                       ggCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAg                                                >  2:401048/1‑140 (MQ=255)

                                                                                        gCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAgg                                               >  2:349828/1‑140 (MQ=255)

                                                                                             ggCATCGACGGAAAATACCGTTAAAGCGCGTAATGTCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATc                                          >  1:90049/1‑140 (MQ=255)

                                                                                             ggCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATc                                          >  2:98074/1‑140 (MQ=255)

                                                                                               cATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATTCCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATccc                                        <  1:200416/140‑1 (MQ=255)

                                                                                               cATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATccc                                        <  2:823813/140‑1 (MQ=255)

                                                                                                  cGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCAtt                                     >  2:193841/1‑140 (MQ=255)

                                                                                                            tACCGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTg                           <  1:494108/140‑1 (MQ=255)

                                                                                                               cGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAg                        <  1:811273/140‑1 (MQ=255)

                                                                                                               cGTTAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAg                        <  2:565285/140‑1 (MQ=255)

                                                                                                                 ttAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGAt                      <  1:561692/140‑1 (MQ=255)

                                                                                                                 ttAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGAAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGAt                      <  1:128149/140‑1 (MQ=255)

                                                                                                                  tAAAGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGAtg                     <  1:510071/140‑1 (MQ=255)

                                                                                                                    aaGCGCGTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGAtgtg                   >  2:387274/1‑140 (MQ=255)

                                                                                                                         cgTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGCGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTa              >  1:665074/1‑140 (MQ=255)

                                                                                                                         cgTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTa              <  2:360458/140‑1 (MQ=255)

                                                                                                                         cgTAATGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTa              <  2:665074/140‑1 (MQ=255)

                                                                                                                            aaTGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAg           <  1:401048/140‑1 (MQ=255)

                                                                                                                             aTGCCGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGt          <  1:163215/140‑1 (MQ=255)

                                                                                                                                ccGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCgg       <  1:462308/140‑1 (MQ=255)

                                                                                                                                ccGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCgg       <  1:387274/140‑1 (MQ=255)

                                                                                                                                ccGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCgg       <  1:349828/140‑1 (MQ=255)

                                                                                                                                 cGATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAGGATGTGGCGTACAGTCGGa      <  2:126443/140‑1 (MQ=255)

                                                                                                                                  gATTACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGAc     <  1:509097/140‑1 (MQ=255)

                                                                                                                                     tACAGCGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTAt  <  1:98074/140‑1 (MQ=255)

TGAACCCTCCACTTTCCTGACATTATTAACGTCAACGCATTCAGGAAATATTTCACGCTTTAACAATCCGGCATATGACAAAGTTCTGGCCCAGGCATCGACGGAAAATACCGTTAAAGCGCGTAATGCCGATTACAACGCGGCAGAAAAAATCCTCATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTAT  >  NC_000913/1394549‑1394821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A