Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,470,785 C→T pseudogene (267/3495 nt) ydbA → putative outer membrane protein, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,470,7850CT100.0% 336.5 / NA 94pseudogene (267/3495 nt)ydbAputative outer membrane protein, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (47/47);  total (47/47)

CGGAGGGAGCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTCGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTATGTGG  >  NC_000913/1470650‑1470920
                                                                                                                                       |                                                                                                                                       
cGGAGGGAGCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTc                                                                                                                                     <  2:437807/140‑1 (MQ=255)
  gagggagCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCt                                                                                                                                      <  1:106640/137‑1 (MQ=255)
  gagggagCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCt                                                                                                                                      >  2:106640/1‑137 (MQ=255)
    gggagCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATc                                                                                                                                 >  2:584057/1‑140 (MQ=255)
     ggagCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCaa                                                                                                                                   >  1:695037/1‑137 (MQ=255)
     ggagCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCaa                                                                                                                                   <  2:695037/137‑1 (MQ=255)
       agCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGaa                                                                                                                              >  2:768861/1‑140 (MQ=255)
         cgcCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAGCAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATa                                                                                                                            >  2:339107/1‑140 (MQ=255)
         cgcCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATa                                                                                                                            >  1:454107/1‑140 (MQ=255)
         cgcCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATa                                                                                                                            >  1:659376/1‑140 (MQ=255)
          gcCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTACTAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAg                                                                                                                           <  2:825393/140‑1 (MQ=255)
          gcCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAg                                                                                                                           <  1:631543/140‑1 (MQ=255)
            cACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGca                                                                                                                         <  2:659376/140‑1 (MQ=255)
            cACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGca                                                                                                                         <  2:814738/140‑1 (MQ=255)
            cACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGca                                                                                                                         <  1:485014/140‑1 (MQ=255)
              cTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGcaca                                                                                                                       <  1:247470/140‑1 (MQ=255)
              cTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGcaca                                                                                                                       <  1:584057/140‑1 (MQ=255)
                      ggTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCaa                                                                                                               >  1:517868/1‑140 (MQ=255)
                           gATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTg                                                                                                          >  1:674956/1‑140 (MQ=255)
                            aTCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCa                                                                                                                <  1:170286/133‑1 (MQ=255)
                            aTCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCa                                                                                                                >  2:170286/1‑133 (MQ=255)
                            aTCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGa                                                                                                         >  1:665690/1‑140 (MQ=255)
                             tCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGAc                                                                                                        >  1:645392/1‑140 (MQ=255)
                             tCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGAc                                                                                                        <  1:839785/140‑1 (MQ=255)
                               acaGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAg                                                                                                      <  1:487303/140‑1 (MQ=255)
                                 aGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCg                                                                                                    >  1:264408/1‑140 (MQ=255)
                                 aGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCg                                                                                                    >  1:161417/1‑140 (MQ=255)
                                 aGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATAATGACAGCg                                                                                                    <  1:305290/140‑1 (MQ=255)
                                   ggaaaGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTGAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGc                                                                                                  >  2:791247/3‑140 (MQ=255)
                                       aGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGcatca                                                                                              >  2:351375/1‑140 (MQ=255)
                                       aGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGcatca                                                                                              <  2:136213/140‑1 (MQ=255)
                                       aGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGcatca                                                                                              >  1:176721/1‑140 (MQ=255)
                                         tGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCAtt                                                                                            <  2:454107/140‑1 (MQ=255)
                                            cGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGAt                                                                                         <  2:393242/140‑1 (MQ=255)
                                                 caacaTAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTa                                                                                    <  1:869752/140‑1 (MQ=255)
                                                  aacaTAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTAt                                                                                   <  2:665690/140‑1 (MQ=255)
                                                  aacaTAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTAt                                                                                   <  1:768861/140‑1 (MQ=255)
                                                     aTAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAACATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGt                                                                                <  1:791247/140‑1 (MQ=255)
                                                         cGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGcatca                                                                                              >  1:722272/1‑122 (MQ=255)
                                                         cGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGcatca                                                                                              <  2:722272/122‑1 (MQ=255)
                                                         cGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTg                                                                            >  2:57367/1‑140 (MQ=255)
                                                         cGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTg                                                                            >  2:99106/1‑140 (MQ=255)
                                                            aTTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTa                                                                         <  1:351375/140‑1 (MQ=255)
                                                              ttAACAAGTATTCAACTGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGTACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAgt                                                                       >  2:346423/1‑140 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTgg                                                                           >  2:164325/1‑136 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTgg                                                                           <  1:164325/136‑1 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAgt                                                                       >  2:643513/1‑140 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAgt                                                                       >  2:125515/1‑140 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAgt                                                                       >  1:96346/1‑140 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAgt                                                                       >  1:847631/1‑140 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAgt                                                                       >  1:592164/1‑140 (MQ=255)
                                                              ttAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAgt                                                                       >  1:20625/1‑140 (MQ=255)
                                                                   aaGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCgg                                                                  >  1:347312/1‑140 (MQ=255)
                                                                       aTTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCAtg                                                              <  1:418767/140‑1 (MQ=255)
                                                                       aTTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCAtg                                                              <  1:339107/140‑1 (MQ=255)
                                                                       aTTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCAtg                                                              >  1:666018/1‑140 (MQ=255)
                                                                         tCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCAtgct                                                            <  2:20625/140‑1 (MQ=255)
                                                                         tCAACAGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGTACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCAtgct                                                            <  1:346423/140‑1 (MQ=255)
                                                                           aaCGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGc                                                                 >  2:394255/1‑133 (MQ=255)
                                                                           aaCGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGc                                                                 <  1:394255/133‑1 (MQ=255)
                                                                                gCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCtata                                                     <  1:17354/140‑1 (MQ=255)
                                                                                  acaTCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGc                                                   >  2:735868/1‑140 (MQ=255)
                                                                                   caTCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCa                                                  <  2:847631/140‑1 (MQ=255)
                                                                                           tCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAAc                                          <  2:161417/140‑1 (MQ=255)
                                                                                              tttatttTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAAcagc                                       >  2:736956/1‑140 (MQ=255)
                                                                                              tttatttTTAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAAcagc                                       >  1:517905/1‑140 (MQ=255)
                                                                                                     ttAATAACGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAAt                                <  1:99106/140‑1 (MQ=255)
                                                                                                        ataaCGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAg                             >  1:560232/1‑140 (MQ=255)
                                                                                                          aaCGATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAggg                           <  2:645392/140‑1 (MQ=255)
                                                                                                             gATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAAt                                >  1:578694/1‑132 (MQ=255)
                                                                                                             gATGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAAt                                <  2:578694/132‑1 (MQ=255)
                                                                                                               tGTCAGTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTaaaa                      >  1:66529/1‑140 (MQ=255)
                                                                                                                    gTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTaca                 <  1:848881/140‑1 (MQ=255)
                                                                                                                    gTAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTaca                 <  2:176721/140‑1 (MQ=255)
                                                                                                                     tAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTacac                <  1:57367/140‑1 (MQ=255)
                                                                                                                     tAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTacac                <  1:776845/140‑1 (MQ=255)
                                                                                                                     tAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTacac                <  2:772419/140‑1 (MQ=255)
                                                                                                                     tAGCATAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTacac                <  2:66529/140‑1 (MQ=255)
                                                                                                                          tAACAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGAt           <  2:666018/140‑1 (MQ=255)
                                                                                                                           aaCAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGAtt          >  1:339384/1‑140 (MQ=255)
                                                                                                                           aaCAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGAtt          >  2:148109/1‑140 (MQ=255)
                                                                                                                           aaCAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGAtt          >  1:703261/1‑140 (MQ=255)
                                                                                                                           aaCAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGAtt          <  1:148109/140‑1 (MQ=255)
                                                                                                                           aaCAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGAt           <  1:560360/139‑1 (MQ=255)
                                                                                                                           aaCAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGAt           >  2:560360/1‑139 (MQ=255)
                                                                                                                            aCAGGGTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTc         <  2:784622/140‑1 (MQ=255)
                                                                                                                               gggTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTacac                <  2:109059/130‑1 (MQ=255)
                                                                                                                               gggTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTacac                >  1:109059/1‑130 (MQ=255)
                                                                                                                               gggTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTAt      >  1:698663/1‑140 (MQ=255)
                                                                                                                               gggTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTAt      <  2:339384/140‑1 (MQ=255)
                                                                                                                                 gTTAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTAtgt    >  2:19737/1‑140 (MQ=255)
                                                                                                                                  ttAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTAtgtg   >  1:528622/1‑140 (MQ=255)
                                                                                                                                  ttAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTAtgtg   >  2:873230/1‑140 (MQ=255)
                                                                                                                                   tAGTTGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTATGTgg  >  1:236019/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
CGGAGGGAGCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTATTTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTTAGTCGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGTGTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTATGTGG  >  NC_000913/1470650‑1470920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A