Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,107,310 A→G R340R (CGT→CGC)  glf ← UDP‑galactopyranose mutase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,107,3100AG100.0% 242.8 / NA 67R340R (CGT→CGC) glfUDP‑galactopyranose mutase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (42/25);  total (42/25)

AAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAACGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTGTAA  >  NC_000913/2107177‑2107446
                                                                                                                                     |                                                                                                                                        
aaaCAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGcgcccg                                                                                                                                    >  2:577652/1‑140 (MQ=255)
  aCAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGcgcccgcc                                                                                                                                  <  1:827374/140‑1 (MQ=255)
              tGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCtt                                                                                                                      <  2:736960/140‑1 (MQ=255)
                tAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGcgcccgc                                                                                                                                   <  2:268123/125‑1 (MQ=255)
                tAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGcgcccgc                                                                                                                                   >  1:268123/1‑125 (MQ=255)
                   tGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGtctt                                                                                                                 <  2:706266/140‑1 (MQ=255)
                               tAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTgctagcta                                                                                                     >  1:687059/1‑140 (MQ=255)
                               tAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTgctagcta                                                                                                     <  1:830941/140‑1 (MQ=255)
                               tAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTg                                                                                                            >  2:306821/1‑133 (MQ=255)
                               tAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTg                                                                                                            <  1:306821/133‑1 (MQ=255)
                                  ttACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAAct                                                                                                  <  2:484857/140‑1 (MQ=255)
                                           agatCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATAtt                                                                                         >  2:324654/1‑140 (MQ=255)
                                           agatCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATAtt                                                                                         >  2:574796/1‑140 (MQ=255)
                                             atCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTc                                                                                       >  1:84795/1‑140 (MQ=255)
                                             atCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTc                                                                                       >  1:676469/1‑140 (MQ=255)
                                                    aTCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTaaaaa                                                                                >  1:109828/1‑140 (MQ=255)
                                                    aTCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTaaaaa                                                                                >  2:324599/1‑140 (MQ=255)
                                                       cGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCt                                                                             >  2:294060/1‑140 (MQ=255)
                                                         tACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTcc                                                                           >  1:189753/1‑140 (MQ=255)
                                                         tACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTcc                                                                           >  2:171715/1‑140 (MQ=255)
                                                         tACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTcc                                                                           <  2:687059/140‑1 (MQ=255)
                                                         tACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTcc                                                                           >  1:81251/1‑140 (MQ=255)
                                                         tACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCAGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTcc                                                                           >  2:773246/1‑140 (MQ=255)
                                                              aTTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGtt                                                                      >  2:793444/1‑140 (MQ=255)
                                                              aTTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGtt                                                                      <  2:109828/140‑1 (MQ=255)
                                                              aTTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGtt                                                                      >  1:445523/1‑140 (MQ=255)
                                                              aTTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGtt                                                                      >  1:598891/1‑140 (MQ=255)
                                                                  tatTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTtta                                                                  <  2:598891/140‑1 (MQ=255)
                                                                  tatTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTtta                                                                  <  2:84795/140‑1 (MQ=255)
                                                                   atTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTttat                                                                 <  2:199403/140‑1 (MQ=255)
                                                                         cACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCAt                                                           >  1:178583/1‑140 (MQ=255)
                                                                          aCTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCAtt                                                          >  2:671669/1‑140 (MQ=255)
                                                                                      gCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGa                                                   >  2:76011/1‑135 (MQ=255)
                                                                                      gCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGa                                                   <  1:76011/135‑1 (MQ=255)
                                                                                        ggCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACt                                                      <  2:579862/130‑1 (MQ=255)
                                                                                        ggCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACt                                                      >  1:579862/1‑130 (MQ=255)
                                                                                        ggCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAgg                                            >  2:733324/1‑140 (MQ=255)
                                                                                         gCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAggg                                           >  1:460811/1‑140 (MQ=255)
                                                                                          cAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGt                                          <  1:242609/140‑1 (MQ=255)
                                                                                          cAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGt                                          >  2:505537/1‑140 (MQ=255)
                                                                                                  aCTTGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGcc                                  <  2:460811/140‑1 (MQ=255)
                                                                                                    ttGATGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCaa                                >  2:204675/1‑140 (MQ=255)
                                                                                                       aTGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACtt                             >  1:825354/1‑140 (MQ=255)
                                                                                                       aTGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACtt                             >  1:632337/1‑140 (MQ=255)
                                                                                                        tGCATATCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACttt                            >  2:163457/1‑140 (MQ=255)
                                                                                                           atatCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCa                         <  1:577652/140‑1 (MQ=255)
                                                                                                           atatCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCa                         <  1:793444/140‑1 (MQ=255)
                                                                                                           atatCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCa                         <  2:178583/140‑1 (MQ=255)
                                                                                                            tatCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCAc                        <  1:533652/140‑1 (MQ=255)
                                                                                                             atCATAATATTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCAct                       >  2:271080/1‑140 (MQ=255)
                                                                                                                 taataTTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTaa                   >  2:42987/1‑140 (MQ=255)
                                                                                                                  aataTTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAAt                  >  2:310370/1‑140 (MQ=255)
                                                                                                                    tatTTATACTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATgg                <  1:773246/140‑1 (MQ=255)
                                                                                                                        tataCTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGatat            >  1:650357/1‑140 (MQ=255)
                                                                                                                         ataCTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATAtt           >  2:320519/1‑140 (MQ=255)
                                                                                                                         ataCTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATAtt           >  1:510538/1‑140 (MQ=255)
                                                                                                                         ataCTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATAtt           >  1:136681/1‑140 (MQ=255)
                                                                                                                           aCTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCt         >  1:395403/1‑140 (MQ=255)
                                                                                                                            cTCGGCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCtt        <  2:81251/140‑1 (MQ=255)
                                                                                                                               ggCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTg     >  1:279278/1‑140 (MQ=255)
                                                                                                                                gCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCttt       >  2:468664/1‑137 (MQ=255)
                                                                                                                                gCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCttt       <  1:468664/137‑1 (MQ=255)
                                                                                                                                gCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTGt    >  2:760224/1‑140 (MQ=255)
                                                                                                                                gCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTGt    >  1:217640/1‑140 (MQ=255)
                                                                                                                                gCCAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTGt    >  1:145288/1‑140 (MQ=255)
                                                                                                                                  cAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTGTaa  <  2:510538/140‑1 (MQ=255)
                                                                                                                                  cAAGCGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTGTaa  <  1:760224/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
AAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGCGGCAGATATCACTTGATGCATATCATAATATTTATACTCGGCCAAACGCCCGCCAAATATAACCTTGTCTTCTCTGCTAGCTAACTCTCTATATTTCTTAAAAAGCTCCATGTTTTTATTATCATTAACTGGATAGTAGGGTTCGTCGCCAACTTTCCACTCTAATGGATATTCTTTTGTAA  >  NC_000913/2107177‑2107446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A