Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,625,141	T→C	R9R (CGT→CGC)	ppx →	exopolyphosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,625,141	0	T	C	100.0%	240.6 / NA	68	R9R (CGT→CGC)	ppx	exopolyphosphatase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/38); total (30/38)

CGATAAAGAACTCAGTAATCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATGCCAATACACGATAAATCCCCTCGTCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGCCAGAT  >  NC_000913/2625005‑2625276

cGATAAAGAACTCAGTAATCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCg                                                                                                                                      <  2:530423/140‑1 (MQ=255)

   tAAAGAACTCAGTAATCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAg                                                                                                                                   >  2:831577/1‑140 (MQ=255)

   tAAAGAACTCAGTAATCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAg                                                                                                                                   >  1:638584/1‑140 (MQ=255)

       gAACTCAGTAATCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGt                                                                                                                               >  2:61194/1‑140 (MQ=255)

                 aTCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGt                                                                                                                     <  1:825017/140‑1 (MQ=255)

                  tCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTc                                                                                                                    >  2:280752/1‑140 (MQ=255)

                               cgcgGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCaa                                                                                                       >  2:151892/1‑140 (MQ=255)

                                    cAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGt                                                                                                  <  2:630646/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  1:280752/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  1:551984/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  1:95335/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  1:396257/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  2:158365/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  2:507874/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  2:624965/140‑1 (MQ=255)

                                           cgcAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  2:661005/140‑1 (MQ=255)

                                                       gcgcAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGccc                                                                               <  1:237137/140‑1 (MQ=255)

                                                       gcgcAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGccc                                                                               <  1:78895/140‑1 (MQ=255)

                                                       gcgcAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGccc                                                                               <  1:61194/140‑1 (MQ=255)

                                                        cgcAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCg                                                                              <  2:854452/140‑1 (MQ=255)

                                                         gcAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCgt                                                                             <  1:550302/140‑1 (MQ=255)

                                                          cAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGTTTCAAACAGTTTTCACATGGTCATAGccc                                                                               <  1:687772/137‑1 (MQ=255)

                                                          cAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGTTTCAAACAGTTTTCACATGGTCATAGccc                                                                               >  2:687772/1‑137 (MQ=255)

                                                          cAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCgtg                                                                            >  1:163076/1‑140 (MQ=255)

                                                          cAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCgtg                                                                            <  2:207500/140‑1 (MQ=255)

                                                            gTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           >  2:214251/1‑123 (MQ=255)

                                                            gTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTcaca                                                                                           <  1:214251/123‑1 (MQ=255)

                                                                   aTTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATg                                                                   <  2:416822/140‑1 (MQ=255)

                                                                              cATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTg                                                                <  2:780573/132‑1 (MQ=255)

                                                                              cATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTg                                                                >  1:780573/1‑132 (MQ=255)

                                                                              cATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAg                                                        >  2:423767/1‑140 (MQ=255)

                                                                              cATCAAATCACTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAg                                                        >  1:158897/1‑140 (MQ=255)

                                                                                        cTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCa                                                         <  1:516581/129‑1 (MQ=255)

                                                                                        cTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCa                                                         >  2:516581/1‑129 (MQ=255)

                                                                                        cTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGgcc                                              >  1:611322/1‑140 (MQ=255)

                                                                                        cTCGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGgcc                                              >  1:184021/1‑140 (MQ=255)

                                                                                          cGAACAACCTGAATAACCCTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGgccgc                                            <  2:611322/140‑1 (MQ=255)

                                                                                                           ccTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCa                           >  2:11048/1‑140 (MQ=255)

                                                                                                           ccTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCa                           >  1:588481/1‑140 (MQ=255)

                                                                                                            cTATACCAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCAt                          <  1:423767/140‑1 (MQ=255)

                                                                                                               taccAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCggg                               >  2:424300/3‑132 (MQ=255)

                                                                                                               taccAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCggg                               <  1:424300/130‑1 (MQ=255)

                                                                                                               taccAATACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTg                       >  2:156263/3‑140 (MQ=255)

                                                                                                                    aTACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGa                  >  1:629026/1‑140 (MQ=255)

                                                                                                                    aTACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGa                  >  2:286945/1‑140 (MQ=255)

                                                                                                                    aTACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGa                  <  1:286945/140‑1 (MQ=255)

                                                                                                                    aTACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGa                  <  2:184021/140‑1 (MQ=255)

                                                                                                                     tACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTTACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGAc                 >  1:180747/1‑140 (MQ=255)

                                                                                                                     tACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCggg                               <  1:186716/126‑1 (MQ=255)

                                                                                                                     tACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCggg                               >  2:186716/1‑126 (MQ=255)

                                                                                                                     tACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCt                        <  1:220247/133‑1 (MQ=255)

                                                                                                                     tACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCt                        >  2:220247/1‑133 (MQ=255)

                                                                                                                     tACACGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGAc                 >  2:487143/1‑140 (MQ=255)

                                                                                                                       cacGATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACgg               >  2:848625/1‑140 (MQ=255)

                                                                                                                          gATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGa                  <  1:201909/134‑1 (MQ=255)

                                                                                                                          gATAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGa                  >  2:201909/1‑134 (MQ=255)

                                                                                                                            tAAATCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTgg          >  1:651844/1‑140 (MQ=255)

                                                                                                                              aaTCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTgggg        <  2:589773/140‑1 (MQ=255)

                                                                                                                               aTCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGc       >  2:522818/1‑140 (MQ=255)

                                                                                                                                tCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCCTCTGGCGGACGGCCTGGGGcc      <  2:629026/140‑1 (MQ=255)

                                                                                                                                tCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGcc      <  2:59527/140‑1 (MQ=255)

                                                                                                                                tCCCCTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGcc      <  1:151892/140‑1 (MQ=255)

                                                                                                                                  cccTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGCCAg    <  2:588481/140‑1 (MQ=255)

                                                                                                                                    cTCGCCCGCAGGAGTTTTCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGCCAGat  <  1:644606/140‑1 (MQ=255)

                                                                                                                                    cTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGcc      >  1:824438/1‑136 (MQ=255)

                                                                                                                                    cTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGcc      <  2:824438/136‑1 (MQ=255)

                                                                                                                                    cTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGCCAGat  <  2:148674/140‑1 (MQ=255)

                                                                                                                                    cTCGCCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGCCAGat  >  1:738837/1‑140 (MQ=255)

CGATAAAGAACTCAGTAATCGCTACGTTCCCCGCGGCAATCGCCGCAAAGTACGGGCGCAGTTGGCGATTTATGACTACATCAAATCACTCGAACAACCTGAATAACCCTATGCCAATACACGATAAATCCCCTCGTCCGCAGGAGTTTGCTGCGGTCGATCTTGGTTCAAACAGTTTTCACATGGTCATAGCCCGTGTGGTAGATGGTGCCATGCAGATTATTGGCCGCCTGAAACAGCGGGTGCATCTGGCGGACGGCCTGGGGCCAGAT  >  NC_000913/2625005‑2625276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A