Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,076,370	(T)_6→7	coding (1087/1278 nt)	yggP ←	putative zinc‑binding dehydrogenase YggP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,076,364	1	.	T	100.0%	168.1 / NA	48	L365I (CTC→ATC)	yggP	putative zinc‑binding dehydrogenase YggP
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (22/26); total (22/26)

TCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAG‑TTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGCCTCTTTCAT  >  NC_000913/3076231‑3076493

tcGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAG‑tttt‑tt                                                                                                                             >  1:662319/1‑140 (MQ=255)

   gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAG‑tttt‑ttta                                                                                                                           >  1:507174/1‑138 (MQ=255)

    ccTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAG‑tttt‑tttacc                                                                                                                         >  1:470379/1‑136 (MQ=255)

       gTTCATTTCAGATGCCGTGCGTTTCCTCGACCAGCCGCGCCAACTCTTTAAACAGTAGTACGGGTATGTC‑TTTTTCGGCAAAAGCAACGATCGCAGTGTGGGGAATGGTCGCGCCGTTGTAAATGCG‑ttat‑ttttgcgcc                                                                                                                      >  2:60914/1‑133 (MQ=255)

       gTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGcc                                                                                                                       >  1:133058/1‑140 (MQ=255)

        ttCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCa                                                                                                                      >  1:584444/1‑140 (MQ=255)

             tCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGat                                                                                                                 >  1:866549/1‑140 (MQ=255)

             tCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGat                                                                                                                 <  2:155573/140‑1 (MQ=255)

             tCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGat                                                                                                                 >  2:623433/1‑140 (MQ=255)

               cAGATGCCGGTCGTATCCTAAACCACCCGCACCAACCCTTAAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAACCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGatat                                                                                                               <  2:545318/140‑1 (MQ=255)

                  aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCg                                                                                                            <  1:744271/140‑1 (MQ=255)

                  aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCg                                                                                                            >  2:179487/1‑140 (MQ=255)

                  aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCg                                                                                                            >  1:549469/1‑140 (MQ=255)

                      cGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAg                                                                                                        <  2:856294/140‑1 (MQ=255)

                       gTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGa                                                                                                       >  2:721757/1‑140 (MQ=255)

                       gTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGa                                                                                                       >  2:497439/1‑140 (MQ=255)

                              tCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCa                                                                                                <  1:623433/140‑1 (MQ=255)

                              tCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCa                                                                                                <  2:234948/140‑1 (MQ=255)

                              tCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCa                                                                                                <  2:549469/140‑1 (MQ=255)

                                cTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACg                                                                                              <  1:497439/140‑1 (MQ=255)

                                cTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACg                                                                                              <  2:133058/140‑1 (MQ=255)

                                cTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACg                                                                                              <  1:721757/140‑1 (MQ=255)

                                    aCCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGttt                                                                                          >  2:74377/1‑140 (MQ=255)

                                       aGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGCTTCTg                                                                                       >  2:255814/1‑140 (MQ=255)

                                           gcgcCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGCTTCTGGCAc                                                                                   <  1:255814/140‑1 (MQ=255)

                                            cgcCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCAcc                                                                                  >  1:276180/1‑140 (MQ=255)

                                                       tAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGcc                                                                       <  2:276180/140‑1 (MQ=255)

                                                        aaaCAGCGGATCGGTTTTGCC‑‑TTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCAc                                                                     <  2:496651/140‑1 (MQ=255)

                                                         aaCAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCAc                                                                     <  1:446528/140‑1 (MQ=255)

                                                           cAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCg                                                                   <  2:584444/140‑1 (MQ=255)

                                                            aGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGa                                                                  <  2:866549/140‑1 (MQ=255)

                                                             gCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCa                                                                           >  1:711033/1‑130 (MQ=255)

                                                             gCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCa                                                                           <  2:711033/130‑1 (MQ=255)

                                                             gCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGat                                                                 >  1:655288/1‑140 (MQ=255)

                                                             gCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGat                                                                 >  2:480542/1‑140 (MQ=255)

                                                              cGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGata                                                                >  2:99125/1‑140 (MQ=255)

                                                                               ttttCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAacg                                                <  1:74377/140‑1 (MQ=255)

                                                                               ttttCGGCAAAACCGGGAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAG‑TTTTCTTACCGCCAGGGATATCCGGCAGATTGAGCACGATTTCTGGCACCGCAACCAGGCCACCGATATGGGTCACCATAAacc                                                <  2:278849/140‑2 (MQ=255)

                                                                                                  tGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGt                             <  2:662319/140‑1 (MQ=255)

                                                                                                   ggCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTg                            <  2:282347/140‑1 (MQ=255)

                                                                                                     cAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGgc                          >  1:90610/1‑140 (MQ=255)

                                                                                                         gAGCGGCATGGTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTa                      >  1:631449/1‑140 (MQ=255)

                                                                                                                   gTCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCg            <  1:480542/140‑1 (MQ=255)

                                                                                                                    tCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           <  2:470379/140‑1 (MQ=255)

                                                                                                                    tCACGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           <  2:631449/140‑1 (MQ=255)

                                                                                                                      aCGCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGCct         <  1:99125/140‑1 (MQ=255)

                                                                                                                        gCCGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGCctct       >  1:316259/1‑140 (MQ=255)

                                                                                                                         ccGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           >  2:294778/1‑135 (MQ=255)

                                                                                                                         ccGTTATAAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           <  1:294778/135‑1 (MQ=255)

                                                                                                                             tataAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           <  2:317298/131‑1 (MQ=255)

                                                                                                                             tataAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           >  1:317298/1‑131 (MQ=255)

                                                                                                                             tataAATGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGCCTCTTTCAt  >  1:64281/1‑140 (MQ=255)

                                                                                                                                  aTGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           >  2:216022/1‑126 (MQ=255)

                                                                                                                                  aTGAGTTTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGc           <  1:216022/126‑1 (MQ=255)

TCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCC‑TTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAG‑TTTT‑TTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGGCTGTAACTGCCCAGTGGCGCTAAGGGCAATCGCCTCTTTCAT  >  NC_000913/3076231‑3076493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A