Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,093,932	T→C	intergenic (+16/+168)	yqgF → / ← yggR	ribonuclease H‑like domain containing nuclease/Type II/IV secretion system family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,093,932	0	T	C	98.2%	194.1 / ‑4.3	57	intergenic (+16/+168)	yqgF/yggR	ribonuclease H‑like domain containing nuclease/Type II/IV secretion system family protein
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (27/29); total (28/29)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01

CACTGTGGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG  >  NC_000913/3093796‑3094067

cACTGTGGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGc                                                                                                                                      <  1:688304/140‑1 (MQ=255)

  cTGTGGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCcggcgg                                                                                                                                    <  1:371157/140‑1 (MQ=255)

  cTGTGGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCcggcgg                                                                                                                                    >  2:466515/1‑140 (MQ=255)

   tgtgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGa                                                                                                                                   <  1:826163/140‑1 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGa                                                                                                                                   >  2:709336/1‑138 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGa                                                                                                                                   <  1:709336/138‑1 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 >  1:372564/1‑140 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 >  1:791612/1‑140 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 >  2:131062/1‑140 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 >  1:549509/1‑140 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 <  1:507421/140‑1 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 >  1:483362/1‑140 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 <  1:368605/140‑1 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 >  1:352200/1‑140 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 >  2:507421/1‑140 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgt                                                                                                                                 <  1:757296/140‑1 (MQ=255)

     tgGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAg                                                                                                                                  <  1:572047/139‑1 (MQ=255)

     tcgAAGCCCGTTCCGGTCGGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAg                                                                                                                                  >  2:572047/3‑139 (MQ=255)

      ggAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAgtg                                                                                                                                <  1:643254/140‑1 (MQ=255)

       gAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCg                                                                                                                                     <  2:243466/134‑1 (MQ=255)

       gAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCg                                                                                                                                     >  1:243466/1‑134 (MQ=255)

        aaGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTa                                                                                                                              <  1:798271/140‑1 (MQ=255)

        aaGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTa                                                                                                                              <  2:482714/140‑1 (MQ=255)

             cGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAaataa                                                                                                                         >  2:717232/1‑140 (MQ=255)

               ttCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAataata                                                                                                                       >  1:138618/1‑140 (MQ=255)

                  cGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATatca                                                                                                                    <  2:549509/140‑1 (MQ=255)

                    gTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATatcatc                                                                                                                  >  2:847317/1‑140 (MQ=255)

                      cTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATcgc                                                                                                                <  1:131062/140‑1 (MQ=255)

                         tttGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTc                                                                                                             <  1:466515/140‑1 (MQ=255)

                                 gggCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGcc                                                                                                     >  2:621176/1‑140 (MQ=255)

                                  ggcggcTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAATGTAAATAATATCATCGCGTCTTATTGCCg                                                                                                    >  2:217841/1‑140 (MQ=255)

                                   gcggcTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCgg                                                                                                   >  1:609895/1‑140 (MQ=255)

                                   gcggcTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCgg                                                                                                   >  2:416786/1‑140 (MQ=255)

                                   gcggcTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCgg                                                                                                   >  2:274253/1‑140 (MQ=255)

                                       cTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGTGTCTTATTGCCGGATgc                                                                                               <  2:599459/140‑1 (MQ=255)

                                            gggCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGt                                                                                          >  1:762049/1‑140 (MQ=255)

                                              gcgcTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGa                                                                                        <  1:274253/140‑1 (MQ=255)

                                                 cTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAaca                                                                                     <  2:138618/140‑1 (MQ=255)

                                                   caacaaAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACAcc                                                                                   <  2:135219/140‑1 (MQ=255)

                                                        aaGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATc                                                                              <  1:416786/140‑1 (MQ=255)

                                                            cAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGa                                                                                        <  2:339793/126‑1 (MQ=255)

                                                            cAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGa                                                                                        >  1:339793/1‑126 (MQ=255)

                                                            cAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGc                                                                          >  1:780320/1‑140 (MQ=255)

                                                              aaGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGcac                                                                        >  2:322185/1‑140 (MQ=255)

                                                                        tgcctctgcGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCa                                                              <  2:780320/140‑1 (MQ=255)

                                                                         gcctctgcGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAg                                                             >  2:415253/1‑140 (MQ=255)

                                                                          cctttgcGGGTATTATTCTCGAAAGCTATTTCGAGCAGGTATATTAAGGCGATTTAAACGCCCGCCGGAGCGTAAATAATATCATCTCGTCTTATTGCCGCATGCGCCGTGAAGACCTTATCCAGCACACATCTGGCAGc                                                            >  2:136316/1‑140 (MQ=255)

                                                                          cctctgcGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGc                                                            >  1:553543/1‑140 (MQ=255)

                                                                              tgcGGTTATTATTATCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATAACATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCt                                                        >  1:177390/1‑140 (MQ=255)

                                                                               gcGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCta                                                       <  1:859914/140‑1 (MQ=255)

                                                                               gcGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAATGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCta                                                       <  1:217841/140‑1 (MQ=255)

                                                                                  gTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAg                                                    <  2:762049/140‑1 (MQ=255)

                                                                                        attCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGGCTGa                                              >  1:880334/1‑140 (MQ=255)

                                                                                                   cTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGtt                                   <  1:621176/140‑1 (MQ=255)

                                                                                                             cAGGGATATTAAGGCGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCAt                         >  2:632860/1‑140 (MQ=255)

                                                                                                                           cGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGc           >  2:452276/1‑140 (MQ=255)

                                                                                                                           cGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGc           >  1:585676/1‑140 (MQ=255)

                                                                                                                           cGATTTAAACGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGc           <  2:394196/140‑1 (MQ=255)

                                                                                                                                tAAACGCCCGGCGGAGTGTAAATAATAACATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTTTTGCCTTTg      <  2:177390/140‑1 (MQ=255)

                                                                                                                                    cGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAgg  <  1:847317/140‑1 (MQ=255)

                                                                                                                                    cGCCCGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAgg  <  1:728544/140‑1 (MQ=255)

CACTGTGGAAGCCCGTTCCGGTCTGTTTGAACAGGGCGGCTATCGGGCGCTCAACAAAGGCAAAGTTGACTCTGCCTCTGCGGTTATTATTCTCGAAAGCTATTTCGAGCAGGGATATTAAGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG  >  NC_000913/3093796‑3094067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A