Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,632,224	T→C	N123D (AAT→GAT)	yhiJ ←	DUF4049 domain‑containing protein YhiJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,632,224	0	T	C	100.0%	261.3 / NA	72	N123D (AAT→GAT)	yhiJ	DUF4049 domain‑containing protein YhiJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (46/26); total (46/26)

ATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGA  >  NC_000913/3632092‑3632359

aTACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAaga                                                                                                                                  >  2:523460/1‑140 (MQ=255)

    aTTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGc                                                                                                                              <  1:289041/140‑1 (MQ=255)

      tataTTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCaa                                                                                                                            >  2:839044/1‑140 (MQ=255)

          ttGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTGTCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGt                                                                                                                        >  2:766819/1‑140 (MQ=255)

             cGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAAt                                                                                                                     >  2:581675/1‑140 (MQ=255)

             cGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAAt                                                                                                                     >  1:338884/1‑140 (MQ=255)

              gATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAAtt                                                                                                                    >  2:847424/1‑140 (MQ=255)

              gATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAAtt                                                                                                                    >  2:113729/1‑140 (MQ=255)

               atatTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAAttt                                                                                                                   <  1:847424/140‑1 (MQ=255)

                tatTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAAtttt                                                                                                                  >  2:785348/1‑140 (MQ=255)

                  ttttCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTg                                                                                                                <  2:200110/140‑1 (MQ=255)

                    ttccagttccagATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCACATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCt                                                                                                              <  2:649138/140‑1 (MQ=255)

                            ccagATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTGTCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTg                                                                                                      <  1:766819/140‑1 (MQ=255)

                             cagATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGt                                                                                                     <  1:581675/140‑1 (MQ=255)

                                 tGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTcaca                                                                                                 <  2:587997/140‑1 (MQ=255)

                                     tttGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATaa                                                                                             <  2:210646/140‑1 (MQ=255)

                                      ttGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATaaa                                                                                            <  1:785348/140‑1 (MQ=255)

                                          aCGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGa                                                                                        >  2:177630/1‑140 (MQ=255)

                                             aCTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATaa                                                                                     >  1:117164/1‑140 (MQ=255)

                                              cTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAat                                                                                    >  1:174131/1‑140 (MQ=255)

                                              cTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAat                                                                                    >  1:820296/1‑140 (MQ=255)

                                                 aGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAattat                                                                                 >  1:398643/1‑140 (MQ=255)

                                                 aGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAattat                                                                                 >  2:155753/1‑140 (MQ=255)

                                                 aGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAattat                                                                                 <  2:498363/140‑1 (MQ=255)

                                                       tGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTcc                                                                           <  1:496468/140‑1 (MQ=255)

                                                           aCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACg                                                                       >  2:780069/1‑140 (MQ=255)

                                                           aCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACg                                                                       >  2:530549/1‑140 (MQ=255)

                                                           aCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACg                                                                       >  1:832671/1‑140 (MQ=255)

                                                             atcatTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTcc                                                                           >  1:156490/1‑134 (MQ=255)

                                                             atcatTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTcc                                                                           <  2:156490/134‑1 (MQ=255)

                                                                   aGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAatat                                                               >  1:183680/1‑140 (MQ=255)

                                                                      aTTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAg                                                            <  1:113729/140‑1 (MQ=255)

                                                                        tATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAat                                                                 <  2:329653/133‑1 (MQ=255)

                                                                        tATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAat                                                                 >  1:329653/1‑133 (MQ=255)

                                                                          tCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACg                                                        >  1:680079/1‑140 (MQ=255)

                                                                          tCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACg                                                        >  1:478949/1‑140 (MQ=255)

                                                                           cATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGc                                                       <  1:177630/140‑1 (MQ=255)

                                                                              ttACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCa                                                      <  2:502388/138‑1 (MQ=255)

                                                                              ttACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCa                                                      >  1:502388/1‑138 (MQ=255)

                                                                               tACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGc                                                   >  1:272005/1‑140 (MQ=255)

                                                                               tACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGc                                                   >  1:649558/1‑140 (MQ=255)

                                                                                   gTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGa                                               <  2:832671/140‑1 (MQ=255)

                                                                                    tCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGAt                                              >  2:374219/1‑140 (MQ=255)

                                                                                    tCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGAt                                              >  2:729754/1‑140 (MQ=255)

                                                                                    tCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGAt                                              >  1:92283/1‑140 (MQ=255)

                                                                                    tCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGAt                                              >  1:741332/1‑140 (MQ=255)

                                                                                     cATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATa                                             <  1:839044/140‑1 (MQ=255)

                                                                                     cATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATa                                             >  1:23944/1‑140 (MQ=255)

                                                                                        attattAAGTAAATAAACAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCa                                          <  2:23944/140‑1 (MQ=255)

                                                                                                 taaataaaCAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATAtt                                 >  1:40985/1‑140 (MQ=255)

                                                                                                 taaataaaCAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATAtt                                 >  2:247370/1‑140 (MQ=255)

                                                                                                   aataaaCAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATAtttt                               <  2:337649/140‑1 (MQ=255)

                                                                                                    ataaaCAATACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATAttttt                              >  1:484978/1‑140 (MQ=255)

                                                                                                           aTACTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATg                       >  2:821517/1‑140 (MQ=255)

                                                                                                             aCTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGAt                     >  2:64127/1‑140 (MQ=255)

                                                                                                              cTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATc                    <  1:155753/140‑1 (MQ=255)

                                                                                                              cTGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATc                    <  1:530549/140‑1 (MQ=255)

                                                                                                               tGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATc                    <  2:469020/139‑1 (MQ=255)

                                                                                                               tGCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATc                    >  1:469020/1‑139 (MQ=255)

                                                                                                                gCACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCg                  <  1:64127/140‑1 (MQ=255)

                                                                                                                 cACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGt                 >  2:494446/1‑140 (MQ=255)

                                                                                                                 cACCAATTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGt                 >  2:162802/1‑140 (MQ=255)

                                                                                                                      aTTAATATCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTa            >  2:382818/1‑140 (MQ=255)

                                                                                                                          atatCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGt        <  1:374219/140‑1 (MQ=255)

                                                                                                                           tatCGGTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTa       >  1:68622/1‑140 (MQ=255)

                                                                                                                                gTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATgg         <  2:58162/133‑1 (MQ=255)

                                                                                                                                gTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATgg         >  1:58162/1‑133 (MQ=255)

                                                                                                                                gTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGa  >  2:867358/1‑140 (MQ=255)

                                                                                                                                gTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGa  >  1:568713/1‑140 (MQ=255)

                                                                                                                                gTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGa  >  2:92972/1‑140 (MQ=255)

                                                                                                                                gTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGa  >  1:208568/1‑140 (MQ=255)

                                                                                                                                gTATCATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGa  >  2:631442/1‑140 (MQ=255)

                                                                                                                                 tatcatCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTa            <  2:292674/129‑1 (MQ=255)

ATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGA  >  NC_000913/3632092‑3632359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A