Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,699,879 C→T P556S (CCT→TCT)  bcsG → cellulose phosphoethanolamine transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,699,8790CT100.0% 238.7 / NA 69P556S (CCT→TCT) bcsGcellulose phosphoethanolamine transferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (39/30);  total (39/30)

GACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTCACG  >  NC_000913/3699759‑3700007
                                                                                                                        |                                                                                                                                
gACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACg                                                                                                               >  1:314110/1‑140 (MQ=255)
  cTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGt                                                                                                                      <  1:373656/131‑1 (MQ=255)
  cTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGt                                                                                                                      >  2:373656/1‑131 (MQ=255)
      aaaaaaCTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGt                                                                                                                      >  1:524845/1‑127 (MQ=255)
      aaaaaaCTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGt                                                                                                                      >  1:408617/1‑127 (MQ=255)
      aaaaaaCTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGt                                                                                                                      <  2:408617/127‑1 (MQ=255)
      aaaaaaCTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGt                                                                                                                      <  2:524845/127‑1 (MQ=255)
      aaaaaaCTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAg                                                                                                         >  1:362752/1‑140 (MQ=255)
           aCTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGc                                                                                                    <  1:140032/140‑1 (MQ=255)
               aCCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGAACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                                                >  2:75600/1‑140 (MQ=255)
                   gTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGAACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTc                                                                                            <  1:75600/140‑1 (MQ=255)
                         tGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCt                                                                                      >  2:222727/1‑140 (MQ=255)
                              caAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                                                           <  1:780181/130‑1 (MQ=255)
                              caAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                                                           >  2:780181/1‑130 (MQ=255)
                              caAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGc                                                                                 >  1:520054/1‑140 (MQ=255)
                                     cACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTcc                                                                          >  1:689909/1‑140 (MQ=255)
                                          gTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGgcg                                                                     <  2:314110/140‑1 (MQ=255)
                                          gTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGgcg                                                                     >  1:46244/1‑140 (MQ=255)
                                                gagaACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                                               <  1:77414/140‑1 (MQ=255)
                                                gagaACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                                               <  1:222727/140‑1 (MQ=255)
                                                gagaACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                                               <  1:787749/140‑1 (MQ=255)
                                                        aaaTGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAc                                                       >  2:163997/1‑140 (MQ=255)
                                                           tGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGc                                                    <  2:46244/140‑1 (MQ=255)
                                                           tGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGc                                                    <  1:163997/140‑1 (MQ=255)
                                                                tagtTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCt                                               >  1:403465/1‑140 (MQ=255)
                                                                   ttATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGAc                                            >  1:363744/1‑140 (MQ=255)
                                                                     aTTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                                          >  1:65508/1‑140 (MQ=255)
                                                                          aTACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                                     >  1:327557/1‑140 (MQ=255)
                                                                          aTACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGAGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                                     <  1:123733/140‑1 (MQ=255)
                                                                           tACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt                                    >  1:63190/1‑140 (MQ=255)
                                                                            aCCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATg                                   >  1:151737/1‑140 (MQ=255)
                                                                            aCCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATg                                   >  1:230064/1‑140 (MQ=255)
                                                                              cAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac                                 >  1:265313/1‑140 (MQ=255)
                                                                                ggATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGacac                               >  1:172497/1‑140 (MQ=255)
                                                                                 gATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCAGCATGACACg                              >  1:516238/1‑140 (MQ=255)
                                                                                  aTAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGt                             <  1:761626/140‑1 (MQ=255)
                                                                                      aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt                         >  1:672239/1‑140 (MQ=255)
                                                                                      aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt                         >  2:169647/1‑140 (MQ=255)
                                                                                          tACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                                     <  1:679093/124‑1 (MQ=255)
                                                                                          tACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                                     >  2:679093/1‑124 (MQ=255)
                                                                                          tACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg                     >  2:729995/1‑140 (MQ=255)
                                                                                          tACGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg                     <  2:520054/140‑1 (MQ=255)
                                                                                           aCGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGTACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGc                    >  2:812210/1‑140 (MQ=255)
                                                                                           aCGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGc                    >  2:704494/1‑140 (MQ=255)
                                                                                            cGTTCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCt                   <  1:704494/140‑1 (MQ=255)
                                                                                               tCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGt                >  2:573909/1‑140 (MQ=255)
                                                                                               tCGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGt                >  2:498701/1‑140 (MQ=255)
                                                                                                cGCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGtt               >  1:633138/1‑140 (MQ=255)
                                                                                                 gCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGtt               <  1:305974/139‑1 (MQ=255)
                                                                                                 gCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGtt               >  2:305974/1‑139 (MQ=255)
                                                                                                 gCCTGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTc              >  1:119833/1‑140 (MQ=255)
                                                                                                    tGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGc           <  2:672239/140‑1 (MQ=255)
                                                                                                    tGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGc           <  1:498701/140‑1 (MQ=255)
                                                                                                    tGAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCAGCATGACACGTTACTTCCGCTTGTTCAGc           <  2:516238/140‑1 (MQ=255)
                                                                                                     gAACGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGcc          <  2:713548/140‑1 (MQ=255)
                                                                                                       aCGGCGGCGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAg        <  2:403465/140‑1 (MQ=255)
                                                                                                         ggcggcGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGtt      <  2:119833/140‑1 (MQ=255)
                                                                                                         ggcggcGACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGtt      <  1:244597/140‑1 (MQ=255)
                                                                                                          gcggcgACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTc     <  2:689909/140‑1 (MQ=255)
                                                                                                           cggcgACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTcc    >  2:70165/1‑139 (MQ=255)
                                                                                                           cggcgACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTCa    <  2:327557/140‑1 (MQ=255)
                                                                                                           cggcgACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTCa    >  2:772216/1‑140 (MQ=255)
                                                                                                             gcgACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGc           >  2:144958/1‑131 (MQ=255)
                                                                                                             gcgACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGc           <  1:144958/131‑1 (MQ=255)
                                                                                                             gcgACTGGGTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTCACg  >  1:47667/1‑140 (MQ=255)
                                                                                                                    ggTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTc     <  2:205379/130‑1 (MQ=255)
                                                                                                                    ggTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTc     >  1:205379/1‑130 (MQ=255)
                                                                                                                    ggTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTCa    >  1:465561/1‑131 (MQ=255)
                                                                                                                    ggTGTCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTCa    <  2:465561/131‑1 (MQ=255)
                                                                                                                        |                                                                                                                                
GACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCAGTTCACG  >  NC_000913/3699759‑3700007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A